rxTest({ test_that(".DollarNames", { mod2 <- rxode2({ ## the order of variables do not matter, the type of compartmental ## model is determined by the parameters specified. CL ~ TCL * exp(eta.Cl) C2 ~ linCmt(KA, CL, V2, Q, V3) eff(0) <- 1 ## This specifies that the effect compartment starts at 1. d / dt(eff) ~ Kin - Kout * (1 - C2 / (EC50 + C2)) * eff ## resp <- eff + err1 pk <- C2 * exp(err2) }) ev <- eventTable(amount.units = "mg", time.units = "hours") %>% add.dosing(dose = 10000, nbr.doses = 10, dosing.interval = 12, dosing.to = 2) %>% add.dosing(dose = 20000, nbr.doses = 5, start.time = 120, dosing.interval = 24, dosing.to = 2) %>% add.sampling(0:240) expect_equal( .DollarNames(ev, ""), c( "canResize", "IDs", "show", "ndose", "nobs", "expand", "getSampling", "get.sampling", "getDosing", "get.dosing", "get.nobs", "get.obs.rec", "getEventTable", "get.EventTable", "copy", "importEventTable", "import.EventTable", "simulate", "clearDosing", "clear_dosing", "clear.dosing", "clearSampling", "clear_sampling", "clear.sampling", "addSampling", "add_sampling", "add.sampling", "addDosing", "add_dosing", "add.dosing", "get_units", "getUnits", "get.units", "units", "dur", "ss", "evid", "addl", "ii", "rate", "amt", "cmt", "high", "time", "low", "id", "env" ) ) p <- data.frame(a = 6, b = seq(0.4, 0.9, length.out = 4)) ## "Study" Differences thetaMat <- diag(3) * 0.01 dimnames(thetaMat) <- list(NULL, c("KA", "TCL", "V2")) sigma <- diag(2) * 0.05 dimnames(sigma) <- list(c("err1", "err2"), c("err1", "err2")) pk4 <- suppressWarnings(rxSolve( mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), dfSub = 100, dfObs = 100, nSub = 4, nStud = 8, thetaMat = thetaMat, sigma = sigma, ev, cores = 1 )) expect_equal(sort(.DollarNames(pk4, "")), sort(c( "pk", "resp", "time", "sim.id", "EC50", "Kout", "Kin", "KA", "V3", "Q", "V2", "eta.Cl", "TCL", "sim.id", "eff0", "units", "nobs", "import.EventTable", "get.units", "get.sampling", "get.obs.rec", "get.nobs", "get.dosing", "get.EventTable", "dll", "counts", "clear.sampling", "clear.dosing", "add.sampling", "add.dosing", "env", "model", "params", "inits", "t", "rxode2", "thetaMat", "sigmaList", "omegaList" ))) pk4 <- suppressWarnings(rxSolve( mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), dfSub = 100, nSub = 4, nStud = 8, thetaMat = thetaMat, sigma = sigma, ev, cores = 1 )) expect_equal(sort(.DollarNames(pk4, "")), sort(c( "pk", "resp", "time", "sim.id", "EC50", "Kout", "Kin", "KA", "V3", "Q", "V2", "eta.Cl", "TCL", "sim.id", "eff0", "units", "nobs", "import.EventTable", "get.units", "get.sampling", "get.obs.rec", "get.nobs", "get.dosing", "get.EventTable", "dll", "counts", "clear.sampling", "clear.dosing", "add.sampling", "add.dosing", "env", "model", "params", "inits", "t", "rxode2", "thetaMat", "omegaList") )) pk4 <- suppressWarnings(rxSolve( mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), nSub = 4, nStud = 8, thetaMat = thetaMat, sigma = sigma, ev, cores = 1 )) expect_equal(sort(.DollarNames(pk4, "")), sort(c( "pk", "resp", "time", "sim.id", "EC50", "Kout", "Kin", "KA", "V3", "Q", "V2", "eta.Cl", "TCL", "sim.id", "eff0", "units", "nobs", "import.EventTable", "get.units", "get.sampling", "get.obs.rec", "get.nobs", "get.dosing", "get.EventTable", "dll", "counts", "clear.sampling", "clear.dosing", "add.sampling", "add.dosing", "env", "model", "params", "inits", "t", "rxode2", "thetaMat" ))) pk4 <- suppressWarnings(rxSolve( mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), nSub = 4, nStud = 8, sigma = sigma, ev, cores = 1 )) expect_equal(sort(.DollarNames(pk4, "")), sort(c( "pk", "resp", "time", "sim.id", "EC50", "Kout", "Kin", "KA", "V3", "Q", "V2", "eta.Cl", "TCL", "sim.id", "eff0", "units", "nobs", "import.EventTable", "get.units", "get.sampling", "get.obs.rec", "get.nobs", "get.dosing", "get.EventTable", "dll", "counts", "clear.sampling", "clear.dosing", "add.sampling", "add.dosing", "env", "model", "params", "inits", "t", "rxode2" ))) }) })