rxTest({ et <- et(1:10) et$b <- 1:10 test_that("lag()", { suppressMessages(expect_error(rxode2({ a <- lag() }))) suppressMessages(expect_error(rxode2({ a <- lag(b, c) }))) m1 <- rxode2({ c <- b + 2 a <- lag(b, 3) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, NA, NA, 1, 2, 3, 4, 5, 6, 7)) m1 <- rxode2({ a <- lag(b, 3) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, NA, NA, 1, 2, 3, 4, 5, 6, 7)) m1 <- rxode2({ a <- lag(b, -1) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(2, 3, 4, 5, 6, 7, 8, 9, 10, NA)) m1 <- rxode2({ a <- lag(b, 0) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, 1:10) m1 <- rxode2({ a <- lag(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) m1 <- rxode2({ a <- b c <- lag(a) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$c, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) m1 <- rxode2({ a <- b c <- lag(a, 1) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$c, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) m1 <- rxode2({ a <- b c <- lead(a, -1) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$c, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) m1 <- rxode2({ c <- b + 3 a <- lag(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) }) test_that("lead()", { suppressMessages(expect_error(rxode2({ a <- lead() }))) suppressMessages(expect_error(rxode2({ a <- lead(b, c) }))) m1 <- rxode2({ c <- b + 2 a <- lead(b, 3) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(4, 5, 6, 7, 8, 9, 10, NA, NA, NA)) m1 <- rxode2({ a <- lead(b, 3) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(4, 5, 6, 7, 8, 9, 10, NA, NA, NA)) m1 <- rxode2({ a <- lead(b, -1) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 1, 2, 3, 4, 5, 6, 7, 8, 9)) m1 <- rxode2({ a <- lead(b, 0) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, 1:10) m1 <- rxode2({ a <- lead(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(2:10, NA)) m1 <- rxode2({ c <- b + 3 a <- lead(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(2:10, NA)) }) test_that("first()", { suppressMessages(expect_error(rxode2({ a <- first() }))) suppressMessages(expect_error(rxode2({ a <- first(b, 1) }))) suppressMessages(expect_error(rxode2({ a <- first(b, 1, 2) }))) m1 <- rxode2({ a <- first(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_true(all(x1$a == 1)) m1 <- rxode2({ c <- b + 3 a <- first(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_true(all(x1$a == 1)) }) test_that("last()", { suppressMessages(expect_error(rxode2({ a <- last() }))) suppressMessages(expect_error(rxode2({ a <- last(b, 1) }))) suppressMessages(expect_error(rxode2({ a <- last(b, 1, 2) }))) m1 <- rxode2({ a <- last(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_true(all(x1$a == 10)) m1 <- rxode2({ c <- b + 3 a <- last(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_true(all(x1$a == 10)) }) et <- et(1:10) et$b <- 2^(1:10) test_that("diff()", { suppressMessages(expect_error(rxode2({ a <- diff() }))) suppressMessages(expect_error(rxode2({ a <- diff(b, 1, 2) }))) suppressMessages(expect_error(rxode2({ a <- diff(b, 1.2) }))) suppressMessages(expect_error(rxode2({ a <- diff(b, c) }))) suppressMessages(expect_error(rxode2({ a <- diff(b, -1) }))) suppressMessages(expect_error(rxode2({ a <- diff(b, 0) }))) m1 <- rxode2({ a <- diff(b) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 2, 4, 8, 16, 32, 64, 128, 256, 512)) m1 <- rxode2({ c <- b a <- diff(c) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 2, 4, 8, 16, 32, 64, 128, 256, 512)) m1 <- rxode2({ c <- b a <- diff(c, 1) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, 2, 4, 8, 16, 32, 64, 128, 256, 512)) m1 <- rxode2({ a <- diff(b, 2) }) expect_s3_class(m1, "rxode2") x1 <- m1 %>% rxSolve(et) expect_equal(x1$a, c(NA, NA, 6, 12, 24, 48, 96, 192, 384, 768)) }) test_that("bad lag() types", { suppressMessages(expect_error(rxode2({ a ~ c + d b <- lag(a) }))) suppressMessages(expect_error(rxode2({ d / dt(a) <- 3 b <- lag(a) }))) suppressMessages(expect_error(rxode2({ a <- a + 3 b <- lag(a) }))) suppressMessages(expect_error(rxode2({ a <- 13 + b b <- lag(a, 3) }))) suppressMessages(expect_error(rxode2({ a <- 13 + b b <- lead(a) }))) }) test_that("test sticky lhs", { mod1 <- rxode2({ KA <- 2.94E-01 CL <- 1.86E+01 V2 <- 4.02E+01 Q <- 1.05E+01 V3 <- 2.97E+02 Kin <- 1 Kout <- 1 EC50 <- 200 C2 <- centr / V2 C3 <- peri / V3 d / dt(depot) <- -KA * depot d / dt(centr) <- KA * depot - CL * C2 - Q * C2 + Q * C3 d / dt(peri) <- Q * C2 - Q * C3 d / dt(eff) <- Kin - Kout * (1 - C2 / (EC50 + C2)) * eff isna <- is.na(amt) if (!is.na(amt)) { tdose <- time } else { tad <- time - tdose } }) ev <- et(amountUnits = "mg", timeUnits = "hours") %>% et(amt = 10000, addl = 9, ii = 12, cmt = "depot") %>% et(time = 120, amt = 2000, addl = 4, ii = 14, cmt = "depot") %>% et(0, 240) r1 <- rxSolve(mod1, ev, addDosing = TRUE) expect_equal(max(r1$tad, na.rm = TRUE), 64) r2 <- rxSolve(mod1, ev, addDosing = FALSE) expect_equal(max(r2$tad, na.rm = TRUE), 64) }) test_that("newind", { mod1 <- rxode2({ KA <- 2.94E-01 CL <- 1.86E+01 V2 <- 4.02E+01 Q <- 1.05E+01 V3 <- 2.97E+02 Kin <- 1 Kout <- 1 EC50 <- 200 C2 <- centr / V2 C3 <- peri / V3 d / dt(depot) <- -KA * depot d / dt(centr) <- KA * depot - CL * C2 - Q * C2 + Q * C3 d / dt(peri) <- Q * C2 - Q * C3 d / dt(eff) <- Kin - Kout * (1 - C2 / (EC50 + C2)) * eff if (!is.na(amt)) { tdose <- time } else { tad <- time - tdose } if (newind <= 1) { first <- 0 } else if (tad > 24) { first <- 24 } }) ev <- et(amountUnits = "mg", timeUnits = "hours") %>% et(amt = 10000, addl = 9, ii = 12, cmt = "depot") %>% et(time = 120, amt = 2000, addl = 4, ii = 14, cmt = "depot") %>% et(0, 240) r1 <- rxSolve(mod1, ev, addDosing = TRUE) expect_equal(unique(r1$first), c(0, 24)) r1 <- rxSolve(mod1, ev, addDosing = FALSE) expect_equal(unique(r1$first), c(0, 24)) }) })