rxTest({ test_that("data.table", { mod <- rxode2({ d / dt(intestine) <- -a * intestine d / dt(blood) <- a * intestine - b * blood }) mod2 <- rxode2({ C2 <- centr / V2 C3 ~ peri / V3 CL ~ TCL * exp(eta.Cl) d / dt(depot) ~ -KA * depot d / dt(centr) ~ KA * depot - CL * C2 - Q * C2 + Q * C3 d / dt(peri) ~ Q * C2 - Q * C3 d / dt(eff) <- Kin - Kout * (1 - C2 / (EC50 + C2)) * eff eff(0) <- 1000 e1 <- err1 e2 <- err2 resp <- eff + e1 pk <- C2 * exp(e2) }) et <- eventTable(time.units = "days") et$add.sampling(seq(0, 10, length.out = 50)) et$add.dosing( dose = 2 / 24, rate = 2, strt.time = 0, nbr.doses = 10, dosing.interval = 1 ) p <- data.frame(a = 6, b = seq(0.4, 0.9, length.out = 4)) dat <- NULL dataFile <- test_path("test-data-setup.qs") if (file.exists(dataFile)) { dat <- qs::qread(dataFile) } for (rt in c("data.table", "tbl")) { p2 <- rxSolve(mod, p, et, cores = 1, returnType = rt) expect_s3_class(p2, rt) if (!is.null(dat)) { sigma <- diag(2) * 0.05 dimnames(sigma) <- list(c("err1", "err2"), c("err1", "err2")) ev <- eventTable(amount.units = "mg", time.units = "hours") %>% add.dosing(dose = 10000, nbr.doses = 10, dosing.interval = 12, dosing.to = 2) %>% add.dosing(dose = 20000, nbr.doses = 5, start.time = 120, dosing.interval = 24, dosing.to = 2) %>% add.sampling(0:240) pk3 <- rxSolve(mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), nSub = 4, ev, sigma = sigma, cores = 2, returnType = rt ) expect_s3_class(pk3, rt) ## Should be no warning here... pk7a <- rxSolve(mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), sigma = sigma, dat, cores = 1, returnType = rt ) expect_s3_class(pk7a, rt) thetaMat <- diag(3) * 0.01 dimnames(thetaMat) <- list(NULL, c("KA", "TCL", "V2")) pk8 <- rxSolve(mod2, c( KA = 2.94E-01, TCL = 1.86E+01, V2 = 4.02E+01, Q = 1.05E+01, V3 = 2.97E+02, Kin = 1, Kout = 1, EC50 = 200 ), omega = matrix(0.2, dimnames = list("eta.Cl", "eta.Cl")), thetaMat = thetaMat, sigma = sigma, dat, nStud = 4, cores = 1, returnType = rt ) expect_s3_class(pk8, rt) } } }) })