downloading reverse dependencies ‘autoslider.core’, ‘bfw’, ‘eoffice’, ‘export’, ‘jsmodule’, ‘officedown’, ‘presenter’, ‘rrtable’, ‘survC’, ‘thinkr’, ‘diagFDR’, ‘esquisse’, ‘openxlsx2’, ‘SUMO’ trying URL 'file:///data/Repositories/CRAN/src/contrib/autoslider.core_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bfw_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/eoffice_0.2.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/export_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/jsmodule_2.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/officedown_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/presenter_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rrtable_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/survC_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/thinkr_0.16.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/diagFDR_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/esquisse_2.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/openxlsx2_1.26.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SUMO_1.2.3.tar.gz' installing dependencies ‘basilisk’, ‘cp4p’, ‘datamods’, ‘doconv’, ‘editData’, ‘epiDisplay’, ‘fabia’, ‘filters’, ‘forestploter’, ‘framecleaner’, ‘hrbrthemes’, ‘jskm’, ‘jstable’, ‘MOFA2’, ‘MOFAdata’, ‘moonBook’, ‘mschart’, ‘officer’, ‘phosphoricons’, ‘RAppArmor’, ‘Rcpp’, ‘rvg’, ‘shinycustomloader’, ‘survIDINRI’, ‘timeROC’, ‘ztable’ also installing the dependencies ‘survC1’, ‘unix’, ‘locatexec’, ‘toastui’ begin installing package ‘survC1’ begin installing package ‘unix’ begin installing package ‘locatexec’ begin installing package ‘Rcpp’ begin installing package ‘epiDisplay’ begin installing package ‘forestploter’ begin installing package ‘framecleaner’ begin installing package ‘moonBook’ begin installing package ‘phosphoricons’ begin installing package ‘hrbrthemes’ begin installing package ‘fabia’ begin installing package ‘MOFAdata’ begin installing package ‘officer’ * installing *source* package ‘locatexec’ ... ** this is package ‘locatexec’ version ‘0.1.1’ ** package ‘locatexec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locatexec) * installing *source* package ‘MOFAdata’ ... ** this is package ‘MOFAdata’ version ‘1.27.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MOFAdata) * installing *source* package ‘framecleaner’ ... ** this is package ‘framecleaner’ version ‘0.2.1’ ** package ‘framecleaner’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (framecleaner) * installing *source* package ‘unix’ ... ** this is package ‘unix’ version ‘1.6.0’ ** package ‘unix’ successfully unpacked and MD5 sums checked ** using staged installation Checking for AppArmor... (Linux) Found pkg-config cflags/libs! Using PKG_CFLAGS= Using PKG_LIBS=-lapparmor ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpvl3X2b/R.INSTALL17ed4678a317b2/unix/src' rm -f unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chroot.c -o chroot.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fork.c -o fork.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c process.c -o process.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c register.c -o register.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rlimit.c -o rlimit.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c userinfo.c -o userinfo.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DHAVE_APPARMOR -DSYS_BUILD_SAFE -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o unix.so chroot.o fork.o process.o register.o rlimit.o userinfo.o util.o -lapparmor -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpvl3X2b/R.INSTALL17ed4678a317b2/unix/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-unix/00new/unix/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (unix) begin installing package ‘RAppArmor’ * installing *source* package ‘phosphoricons’ ... ** this is package ‘phosphoricons’ version ‘0.2.1’ ** package ‘phosphoricons’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (phosphoricons) * installing *source* package ‘forestploter’ ... ** this is package ‘forestploter’ version ‘1.1.3’ ** package ‘forestploter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forestploter) * installing *source* package ‘moonBook’ ... ** this is package ‘moonBook’ version ‘0.3.1’ ** package ‘moonBook’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moonBook) * installing *source* package ‘RAppArmor’ ... ** this is package ‘RAppArmor’ version ‘3.2.5’ ** package ‘RAppArmor’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags/libs! Using PKG_CFLAGS= Using PKG_LIBS=-lapparmor ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2CrtWG/R.INSTALL17f04d634c5ca3/RAppArmor/src' rm -f RAppArmor.so affinity.o apparmor.o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c affinity.c -o affinity.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c apparmor.c -o apparmor.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RAppArmor.so affinity.o apparmor.o init.o -lapparmor -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2CrtWG/R.INSTALL17f04d634c5ca3/RAppArmor/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RAppArmor/00new/RAppArmor/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RAppArmor) * installing *source* package ‘survC1’ ... ** this is package ‘survC1’ version ‘1.0-3’ ** package ‘survC1’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeM72W6/R.INSTALL17ed4c34492705/survC1/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c husurvC1v1.f -o husurvC1v1.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survC1_init.c -o survC1_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o survC1.so husurvC1v1.o survC1_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeM72W6/R.INSTALL17ed4c34492705/survC1/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survC1/00new/survC1/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survC1) begin installing package ‘survIDINRI’ * installing *source* package ‘hrbrthemes’ ... ** this is package ‘hrbrthemes’ version ‘0.9.3’ ** package ‘hrbrthemes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hrbrthemes) * installing *source* package ‘survIDINRI’ ... ** this is package ‘survIDINRI’ version ‘1.1-2’ ** package ‘survIDINRI’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprcJAwN/R.INSTALL17f222266be77d/survIDINRI/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survIDINRI_init.c -o survIDINRI_init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c unoecdfv1.f -o unoecdfv1.o unoecdfv1.f:7:72: 7 | double precision cutoff(nc), OUTECDF(nc), score(n), weight(n), TMP1, TMP2 | 1 Warning: Line truncated at (1) [-Wline-truncation] unoecdfv1.f:13:17: 13 | TMP2=TMP2+weight(i) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] unoecdfv1.f:15:20: 15 | TMP1=TMP1+weight(i) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] unoecdfv1.f:7:70: 7 | double precision cutoff(nc), OUTECDF(nc), score(n), weight(n), TMP1, TMP2 | 1~~ Warning: Unused variable ‘tmp’ declared at (1) [-Wunused-variable] gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o survIDINRI.so survIDINRI_init.o unoecdfv1.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprcJAwN/R.INSTALL17f222266be77d/survIDINRI/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survIDINRI/00new/survIDINRI/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survIDINRI) * installing *source* package ‘fabia’ ... ** this is package ‘fabia’ version ‘2.57.0’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIG1RJV/R.INSTALL17ed5c2645a5af/fabia/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fabiac.c -o fabiac.o fabiac.c: In function ‘readSpfabicResult’: fabiac.c:3588:17: warning: argument 1 null where non-null expected [-Wnonnull] 3588 | fclose (pFile); | ^~~~~~~~~~~~~~ In file included from fabiac.c:2: /usr/include/stdio.h:187:12: note: in a call to function ‘fclose’ declared ‘nonnull’ 187 | extern int fclose (FILE *__stream) __nonnull ((1)); | ^~~~~~ gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o fabia.so fabiac.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIG1RJV/R.INSTALL17ed5c2645a5af/fabia/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fabia/00new/fabia/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fabia) * installing *source* package ‘epiDisplay’ ... ** this is package ‘epiDisplay’ version ‘3.7.0.0’ ** package ‘epiDisplay’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epiDisplay) * installing *source* package ‘officer’ ... ** this is package ‘officer’ version ‘0.7.4’ ** package ‘officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officer) begin installing package ‘mschart’ * installing *source* package ‘mschart’ ... ** this is package ‘mschart’ version ‘0.4.1’ ** package ‘mschart’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mschart) * installing *source* package ‘Rcpp’ ... ** this is package ‘Rcpp’ version ‘1.1.1-1.1’ ** package ‘Rcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNQXN4x/R.INSTALL17ed4912161f5e/Rcpp/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c api.cpp -o api.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c attributes.cpp -o attributes.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c barrier.cpp -o barrier.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c date.cpp -o date.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c module.cpp -o module.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_init.cpp -o rcpp_init.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNQXN4x/R.INSTALL17ed4912161f5e/Rcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rcpp/00new/Rcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rcpp) begin installing package ‘filters’ begin installing package ‘jskm’ begin installing package ‘shinycustomloader’ begin installing package ‘jstable’ begin installing package ‘timeROC’ begin installing package ‘editData’ begin installing package ‘cp4p’ begin installing package ‘basilisk’ begin installing package ‘toastui’ begin installing package ‘doconv’ begin installing package ‘ztable’ begin installing package ‘rvg’ * installing *source* package ‘filters’ ... ** this is package ‘filters’ version ‘0.3.1’ ** package ‘filters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filters) * installing *source* package ‘shinycustomloader’ ... ** this is package ‘shinycustomloader’ version ‘0.9.0’ ** package ‘shinycustomloader’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinycustomloader) * installing *source* package ‘doconv’ ... ** this is package ‘doconv’ version ‘0.4.0’ ** package ‘doconv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doconv) * installing *source* package ‘editData’ ... ** this is package ‘editData’ version ‘0.1.8’ ** package ‘editData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (editData) * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.23.0’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk) begin installing package ‘MOFA2’ * installing *source* package ‘toastui’ ... ** this is package ‘toastui’ version ‘0.4.0’ ** package ‘toastui’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toastui) begin installing package ‘datamods’ * installing *source* package ‘timeROC’ ... ** this is package ‘timeROC’ version ‘0.4.1’ ** package ‘timeROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (timeROC) * installing *source* package ‘ztable’ ... ** this is package ‘ztable’ version ‘0.2.3’ ** package ‘ztable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ztable) * installing *source* package ‘jskm’ ... ** this is package ‘jskm’ version ‘0.6.2’ ** package ‘jskm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jskm) * installing *source* package ‘datamods’ ... ** this is package ‘datamods’ version ‘1.5.3’ ** package ‘datamods’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (datamods) * installing *source* package ‘cp4p’ ... ** this is package ‘cp4p’ version ‘0.3.6’ ** package ‘cp4p’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cp4p) * installing *source* package ‘jstable’ ... ** this is package ‘jstable’ version ‘1.3.25’ ** package ‘jstable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (jstable) * installing *source* package ‘MOFA2’ ... ** this is package ‘MOFA2’ version ‘1.21.3’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘rownames’ from package ‘base’ in package ‘MOFA2’ Creating a generic function for ‘colnames’ from package ‘base’ in package ‘MOFA2’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘MOFA2’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘MOFA2’ Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘MOFA2’ Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘MOFA2’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MOFA2) * installing *source* package ‘rvg’ ... ** this is package ‘rvg’ version ‘0.4.2’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-16) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSREunA/R.INSTALL17f3c62daa38cb/rvg/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c a_color.cpp -o a_color.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c a_prstgeom.cpp -o a_prstgeom.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c clipper.cpp -o clipper.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c line_style.cpp -o line_style.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c main_tree.cpp -o main_tree.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ppr.cpp -o ppr.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pptx.cpp -o pptx.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c raster.cpp -o raster.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rpr.cpp -o rpr.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c shapes.cpp -o shapes.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c text.cpp -o text.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_nv_pr.cpp -o write_nv_pr.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xfrm.cpp -o xfrm.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/tmp/CRAN_recheck/Library/Rcpp/include' -I'/home/hornik/lib/R/Library/4.7/x86_64-linux-gnu/systemfonts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xlsx.cpp -o xlsx.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rvg.so RcppExports.o a_color.o a_prstgeom.o clipper.o line_style.o main_tree.o ppr.o pptx.o raster.o rpr.o shapes.o text.o write_nv_pr.o xfrm.o xlsx.o -lpng -lz -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSREunA/R.INSTALL17f3c62daa38cb/rvg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rvg/00new/rvg/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvg) checking rvg_0.4.2.tar.gz ... checking bfw_0.4.2.tar.gz ... checking autoslider.core_0.3.2.tar.gz ... checking eoffice_0.2.3.tar.gz ... checking export_0.3.2.tar.gz ... checking jsmodule_2.0.1.tar.gz ... checking officedown_0.4.1.tar.gz ... checking presenter_0.1.2.tar.gz ... checking rrtable_0.3.0.tar.gz ... checking survC_0.1.0.tar.gz ... checking thinkr_0.16.tar.gz ... checking diagFDR_0.1.0.tar.gz ... checking esquisse_2.1.0.tar.gz ... checking openxlsx2_1.26.tar.gz ... checking SUMO_1.2.3.tar.gz ... Depends: Package: rvg Depends: R (>= 3.0) Imports: gdtools (>= 0.5.0), grDevices, officer (>= 0.7.4), Rcpp (>= 0.12.12), rlang, systemfonts, xml2 (>= 1.0.0) LinkingTo: Rcpp, systemfonts Timings: user system elapsed rvg 75.528 6.305 83.531 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 13 Check results summary: rvg ... OK rdepends_autoslider.core ... OK rdepends_bfw ... OK rdepends_diagFDR ... OK rdepends_eoffice ... OK rdepends_esquisse ... OK rdepends_export ... OK rdepends_jsmodule ... OK rdepends_officedown ... OK rdepends_openxlsx2 ... OK rdepends_presenter ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_rrtable ... OK rdepends_SUMO ... OK rdepends_survC ... OK rdepends_thinkr ... OK Check results changes: Package: diagFDR Check: examples Old result: ERROR New result: OK