* installing *source* package ‘rts2’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.4 (1)’
using C++17


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
5 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c create_new_models.cpp -o create_new_models.o
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
   19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
   33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
      |         ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
  437 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
  647 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
  648 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  809 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
  837 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:257:11: warning: unused variable 'a' [-Wunused-variable]
  257 |     float a = std::stod(s);
      |           ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:5:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formula.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formulaparse.h:207:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
  207 |   bool add_check, variable_in_data;
      |                   ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:4:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modelbits.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/nngpcovariance.hpp:379:14: warning: unused variable 'av' [-Wunused-variable]
  379 |   double au, av, qf;
      |              ^~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:13:
../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable]
  498 |   double au, av, qf1;
      |                  ^~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:15:
In file included from ../inst/include/rts/regionlinearpredictor.h:4:
../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |                        ^~~~
../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |                           ^~~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
../inst/include/rts/rtsmodeloptim.h:588:14: warning: unused variable 'logl' [-Wunused-variable]
  588 |       double logl = 0;
      |              ^~~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:5:
../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable]
  467 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable]
  514 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable]
  561 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable]
  608 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable]
  661 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable]
  714 |   int R = region.nRegion;
      |       ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'rts::nngpCovariance' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<rts::nngpCovariance>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:15:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from create_new_models.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
36 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c model_module.cpp -o model_module.o
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
   19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
   33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
      |         ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
  437 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
  647 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
  648 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  809 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
  837 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:257:11: warning: unused variable 'a' [-Wunused-variable]
  257 |     float a = std::stod(s);
      |           ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:5:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formula.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formulaparse.h:207:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
  207 |   bool add_check, variable_in_data;
      |                   ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:4:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modelbits.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/nngpcovariance.hpp:379:14: warning: unused variable 'av' [-Wunused-variable]
  379 |   double au, av, qf;
      |              ^~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:13:
../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable]
  498 |   double au, av, qf1;
      |                  ^~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:15:
In file included from ../inst/include/rts/regionlinearpredictor.h:4:
../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |                        ^~~~
../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |                           ^~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
../inst/include/rts/rtsmodeloptim.h:588:14: warning: unused variable 'logl' [-Wunused-variable]
  588 |       double logl = 0;
      |              ^~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:5:
../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable]
  467 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable]
  514 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable]
  561 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable]
  608 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable]
  661 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable]
  714 |   int R = region.nRegion;
      |       ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:15:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/bobyqa_algo.h:201:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/bobyqa_general.h:251:1: warning: unused function 'bobyqa' [-Wunused-function]
  251 | bobyqa(const INTEGER n, const INTEGER npt,
      | ^~~~~~
In file included from model_module.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
35 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c model_module2.cpp -o model_module2.o
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
   19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
   33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
      |         ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
  437 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
  647 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
  648 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  809 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
  837 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:257:11: warning: unused variable 'a' [-Wunused-variable]
  257 |     float a = std::stod(s);
      |           ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:5:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formula.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formulaparse.h:207:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
  207 |   bool add_check, variable_in_data;
      |                   ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:4:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modelbits.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/nngpcovariance.hpp:379:14: warning: unused variable 'av' [-Wunused-variable]
  379 |   double au, av, qf;
      |              ^~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:13:
../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable]
  498 |   double au, av, qf1;
      |                  ^~~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:15:
In file included from ../inst/include/rts/regionlinearpredictor.h:4:
../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |                        ^~~~
../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |                           ^~~~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
../inst/include/rts/rtsmodeloptim.h:588:14: warning: unused variable 'logl' [-Wunused-variable]
  588 |       double logl = 0;
      |              ^~~~
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:5:
../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable]
  467 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable]
  514 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable]
  561 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable]
  608 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable]
  661 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable]
  714 |   int R = region.nRegion;
      |       ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module2.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
34 warnings generated.


Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : 
  invalid non-character version specification 'x' (type: double)
Calls: cat ... as.numeric_version -> numeric_version -> .make_numeric_version
Execution halted
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG -I"../inst/include" -I"/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rstan/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/StanHeaders/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include' -I'/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c model_module_extension.cpp -o model_module_extension.o
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:61:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  273 |       Index count = 0;
      |             ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseLU:35:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
   78 |   Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
   79 |   Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
      |         ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:31:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
   72 |                         Index replacements = 0;
      |                               ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:37:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  246 |   int count = 0;
      |       ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:19:9: warning: 'EIGEN_DEFAULT_DENSE_INDEX_TYPE' macro redefined [-Wmacro-redefined]
   19 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE int
      |         ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/Macros.h:33:9: note: previous definition is here
   33 | #define EIGEN_DEFAULT_DENSE_INDEX_TYPE std::ptrdiff_t
      |         ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:145:7: warning: unused variable 'x' [-Wunused-variable]
  145 |   int x ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:437:10: warning: unused variable 'val' [-Wunused-variable]
  437 |   double val;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:647:10: warning: unused variable 'mem' [-Wunused-variable]
  647 |   double mem = 0;
      |          ^~~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:648:7: warning: unused variable 'nz' [-Wunused-variable]
  648 |   int nz = Ap.back();
      |       ^~
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:809:7: warning: variable 'ncmpa' set but not used [-Wunused-but-set-variable]
  809 |   int ncmpa = 0 ;
      |       ^
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/sparsematrix.h:837:19: warning: unused variable 'ilast' [-Wunused-variable]
  837 |   int deg, inext, ilast;
      |                   ^~~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:37:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/SparseChol.h:4:
/srv/hornik/tmp/CRAN_pretest/Library/SparseChol/include/operators.h:14:10: warning: unused variable 'val' [-Wunused-variable]
   14 |   double val;
      |          ^~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:257:11: warning: unused variable 'a' [-Wunused-variable]
  257 |     float a = std::stod(s);
      |           ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:5:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formula.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/formulaparse.h:207:19: warning: variable 'variable_in_data' set but not used [-Wunused-but-set-variable]
  207 |   bool add_check, variable_in_data;
      |                   ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:4:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modelbits.hpp:6:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/nngpcovariance.hpp:379:14: warning: unused variable 'av' [-Wunused-variable]
  379 |   double au, av, qf;
      |              ^~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:354:12: warning: unused variable 'result' [-Wunused-variable]
  354 |     double result = newuoa_closure( &closure, dim, control.npt, current_values.data(), control.rhobeg, control.rhoend, control.maxfun, w.data(), &fn_counter);
      |            ^~~~~~
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:503:16: warning: unused variable 'a' [-Wunused-variable]
  503 |         double a = eval(current_values, g);
      |                ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:13:
../inst/include/rts/nngpcovariance.h:498:18: warning: unused variable 'qf1' [-Wunused-variable]
  498 |   double au, av, qf1;
      |                  ^~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
In file included from ../inst/include/rts/rtsmodeloptim.h:4:
In file included from ../inst/include/rts/rtsmodelbits.h:15:
In file included from ../inst/include/rts/regionlinearpredictor.h:4:
../inst/include/rts/regiondata.h:67:7: warning: unused variable 'nInter' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:67:24: warning: unused variable 'idx1' [-Wunused-variable]
   67 |   int nInter, r, t, l, idx1;
      |                        ^~~~
../inst/include/rts/regiondata.h:115:7: warning: unused variable 'nInter' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |       ^~~~~~
../inst/include/rts/regiondata.h:115:27: warning: unused variable 'idx1' [-Wunused-variable]
  115 |   int nInter, r, t, l, j, idx1;
      |                           ^~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:4:
In file included from ../inst/include/rts/rtsmodel.h:11:
../inst/include/rts/rtsmodeloptim.h:588:14: warning: unused variable 'logl' [-Wunused-variable]
  588 |       double logl = 0;
      |              ^~~~
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:5:
../inst/include/rts/rtsregionmodel.h:467:7: warning: unused variable 'R' [-Wunused-variable]
  467 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:514:7: warning: unused variable 'R' [-Wunused-variable]
  514 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:561:7: warning: unused variable 'R' [-Wunused-variable]
  561 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:608:7: warning: unused variable 'R' [-Wunused-variable]
  608 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:661:7: warning: unused variable 'R' [-Wunused-variable]
  661 |   int R = region.nRegion;
      |       ^
../inst/include/rts/rtsregionmodel.h:714:7: warning: unused variable 'R' [-Wunused-variable]
  714 |   int R = region.nRegion;
      |       ^
model_module_extension.cpp:334:6: error: expected value in expression
  334 | #elif
      |      ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:36:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/variant:1876:22: error: static assertion failed due to requirement '__visit_rettypes_match': std::visit requires the visitor to have the same return type for all alternatives of a variant
 1876 |               static_assert(__visit_rettypes_match,
      |                             ^~~~~~~~~~~~~~~~~~~~~~
model_module_extension.cpp:339:17: note: in instantiation of function template specialization 'std::visit<overloaded<(lambda at model_module_extension.cpp:330:5), (lambda at model_module_extension.cpp:331:5)> &, std::variant<int, Rcpp::XPtr<rts::rtsModel<BitsAR>>, Rcpp::XPtr<rts::rtsModel<BitsNNGP>>, Rcpp::XPtr<rts::rtsModel<BitsHSGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsAR>>, Rcpp::XPtr<rts::rtsRegionModel<BitsNNGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsHSGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsARRegion>>, Rcpp::XPtr<rts::rtsRegionModel<BitsNNGPRegion>>, Rcpp::XPtr<rts::rtsRegionModel<BitsHSGPRegion>>> &>' requested here
  339 |   auto S = std::visit(functor,model.ptr);
      |                 ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:36:
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/variant:1879:8: error: non-void constexpr function 'visit<overloaded<(lambda at model_module_extension.cpp:330:5), (lambda at model_module_extension.cpp:331:5)> &, std::variant<int, Rcpp::XPtr<rts::rtsModel<BitsAR>>, Rcpp::XPtr<rts::rtsModel<BitsNNGP>>, Rcpp::XPtr<rts::rtsModel<BitsHSGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsAR>>, Rcpp::XPtr<rts::rtsRegionModel<BitsNNGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsHSGP>>, Rcpp::XPtr<rts::rtsRegionModel<BitsARRegion>>, Rcpp::XPtr<rts::rtsRegionModel<BitsNNGPRegion>>, Rcpp::XPtr<rts::rtsRegionModel<BitsHSGPRegion>>> &>' should return a value
 1879 |               return;
      |               ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/general.h:10:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:26:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:46:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::Covariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::nngpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   31 |     delete obj;
      |     ^
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer<glmmr::Model<glmmr::ModelBits<glmmr::hsgpCovariance, glmmr::LinearPredictor>>>' requested here
   54 |     void Finalizer(T*) = standard_delete_finalizer<T>,
      |                          ^
In file included from model_module_extension.cpp:1:
In file included from ../inst/include/rtsheader.h:3:
In file included from ../inst/include/rts/rtsmaths.h:3:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr.h:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/model.hpp:8:
In file included from /srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/modeloptim.hpp:12:
/srv/hornik/tmp/CRAN_pretest/Library/glmmrBase/include/glmmr/optim/optim.h:413:20: warning: private field 'iter' is not used [-Wunused-private-field]
  413 |   int              iter = 0;
      |                    ^
34 warnings and 3 errors generated.
make: *** [/home/hornik/tmp/R-d-clang-19/etc/Makeconf:202: model_module_extension.o] Error 1
ERROR: compilation failed for package ‘rts2’
* removing ‘/srv/hornik/tmp/CRAN_pretest/rts2.Rcheck/rts2’