* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/rtop.Rcheck’ * using R Under development (unstable) (2025-07-29 r88464) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-19) 14.2.0 GNU Fortran (Debian 14.2.0-19) 14.2.0 * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * checking for file ‘rtop/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rtop’ version ‘0.6-14’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/5s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘rtop’ can be installed ... [6s/6s] OK * used C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ * used Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [12s/12s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking examples ... [2s/2s] OK * checking for unstated dependencies in ‘demo’ ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [30s/30s] NOTE Running ‘rtop.R’ [9s/9s] Comparing ‘rtop.Rout’ to ‘rtop.Rout.save’ ...105,107c105,106 < Warning message: < In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : < there is no package called 'intamap' --- > [1] TRUE > [1] TRUE 160,161c159,160 < 1 76 76 36.0 490602 523496 35982138 0.0116 0.0106 0.0101 0.0104 < 2 77 77 38.5 490602 523496 38487054 0.0116 0.0141 0.0125 0.0138 --- > 1 76 76 36.0 490602 523496 35982138 0.0123 0.0106 0.0112 0.0117 > 2 77 77 38.5 490602 523496 38487054 0.0124 0.0120 0.0121 0.0133 163,164c162,163 < 1 0.0124 < 2 0.0119 --- > 1 0.0112 > 2 0.0112 198,227c197,226 < 1 1 0.01392 0.01006 0.00970 0.01214 0.00801 0.01422 0.01178 < 2 2 0.01563 0.01424 0.01182 0.01693 0.01502 0.01498 0.01384 < 3 3 0.00568 0.01256 0.01094 0.00924 0.00969 0.01088 0.01207 < 4 4 0.01103 0.01377 0.01065 0.01540 0.01258 0.00624 0.01623 < 5 5 0.01219 0.01148 0.01469 0.01281 0.01041 0.01392 0.01025 < 6 6 0.00584 0.00870 0.01398 0.00914 0.00780 0.01074 0.01008 < 7 7 0.01001 0.00868 0.00804 0.01121 0.01080 0.01044 0.00784 < 8 8 0.01194 0.00950 0.01008 0.00975 0.00840 0.01267 0.00553 < 9 9 0.01039 0.01082 0.01094 0.01036 0.01258 0.01021 0.00704 < 10 10 0.01093 0.01145 0.01073 0.00823 0.01022 0.01335 0.00663 < 11 11 0.01214 0.01198 0.01224 0.01398 0.01179 0.01346 0.01226 < 12 12 0.01626 0.01634 0.01609 0.01415 0.01384 0.01939 0.01667 < 13 13 0.01111 0.00971 0.00715 0.00939 0.00939 0.00802 0.00928 < 14 14 0.01930 0.01832 0.01481 0.01717 0.01812 0.02230 0.02216 < 15 15 0.01179 0.01084 0.01302 0.00992 0.01049 0.01226 0.00957 < 16 16 0.01048 0.01062 0.01104 0.00919 0.01035 0.01124 0.00910 < 17 17 0.01197 0.01262 0.01161 0.01235 0.00851 0.01055 0.01071 < 18 18 0.00942 0.01015 0.01091 0.00871 0.01112 0.00998 0.00784 < 19 19 0.00862 0.00932 0.00848 0.01036 0.01429 0.00972 0.00739 < 20 20 0.00920 0.00961 0.01184 0.01016 0.01088 0.01310 0.01030 < 21 21 0.00747 0.00253 0.00765 0.00503 0.00776 0.00712 0.01010 < 22 22 0.00419 0.00720 0.00551 0.00565 0.00887 0.00800 0.00765 < 23 23 0.01205 0.00876 0.01171 0.01369 0.01196 0.01153 0.01055 < 24 24 0.01017 0.01046 0.00898 0.01251 0.00950 0.01112 0.01128 < 25 25 0.01147 0.00939 0.01099 0.01046 0.01146 0.00908 0.00866 < 26 26 0.01594 0.01759 0.01611 0.01800 0.01616 0.01727 0.01800 < 27 27 0.01770 0.01226 0.01440 0.01204 0.01177 0.01612 0.01521 < 28 28 0.01372 0.01751 0.01695 0.01886 0.01606 0.01950 0.01530 < 29 29 0.01198 0.00725 0.01161 0.01378 0.01342 0.00842 0.00986 < 30 30 0.00944 0.00954 0.00958 0.00842 0.01000 0.01021 0.01009 --- > 1 1 0.01339 0.01285 0.01036 0.01525 0.00879 0.01083 0.01117 > 2 2 0.01308 0.01459 0.01208 0.01243 0.01307 0.01249 0.01378 > 3 3 0.01215 0.01265 0.01323 0.01154 0.01184 0.00444 0.01167 > 4 4 0.01324 0.01059 0.01083 0.00873 0.01441 0.01255 0.01028 > 5 5 0.01069 0.01001 0.01108 0.01304 0.01149 0.01277 0.01238 > 6 6 0.01076 0.00914 0.00910 0.00655 0.00942 0.00769 0.00884 > 7 7 0.00958 0.00985 0.00976 0.01027 0.00835 0.00522 0.00957 > 8 8 0.01070 0.00791 0.00964 0.01217 0.00739 0.01053 0.00650 > 9 9 0.01142 0.00951 0.01067 0.01215 0.01054 0.00895 0.01000 > 10 10 0.01038 0.00954 0.01092 0.01153 0.00933 0.00977 0.00839 > 11 11 0.01148 0.00980 0.01054 0.01213 0.01192 0.01091 0.01174 > 12 12 0.01844 0.01517 0.01265 0.01561 0.01995 0.01557 0.01743 > 13 13 0.00773 0.00991 0.01181 0.00856 0.00658 0.01020 0.00949 > 14 14 0.01621 0.01723 0.01995 0.02314 0.01963 0.02078 0.02059 > 15 15 0.01086 0.00939 0.01036 0.01124 0.00953 0.01076 0.01092 > 16 16 0.00977 0.00792 0.01075 0.00940 0.00916 0.01099 0.00995 > 17 17 0.00934 0.01326 0.01278 0.01177 0.00936 0.00897 0.01438 > 18 18 0.00990 0.00895 0.01035 0.00855 0.01014 0.00939 0.01038 > 19 19 0.01049 0.01087 0.00936 0.01066 0.00767 0.00867 0.01081 > 20 20 0.01179 0.01055 0.01104 0.00930 0.00835 0.00947 0.01035 > 21 21 0.00781 0.01019 0.00855 0.00872 0.00642 0.00643 0.00706 > 22 22 0.00819 0.00882 0.00675 0.00403 0.00665 0.00671 0.00923 > 23 23 0.01233 0.01366 0.01484 0.01159 0.01052 0.01108 0.01196 > 24 24 0.00923 0.00914 0.01118 0.01119 0.01111 0.01036 0.01345 > 25 25 0.00954 0.00898 0.01096 0.01021 0.00843 0.01012 0.01017 > 26 26 0.01856 0.01691 0.01766 0.01248 0.01687 0.01539 0.01446 > 27 27 0.01251 0.01291 0.01216 0.01385 0.01317 0.01470 0.01271 > 28 28 0.01935 0.01488 0.01535 0.01387 0.01877 0.01604 0.01800 > 29 29 0.01506 0.01130 0.01191 0.01109 0.01028 0.00900 0.01288 > 30 30 0.00986 0.00939 0.01119 0.01003 0.00852 0.01101 0.01044 229,258c228,257 < 1 0.01063 0.01006 0.01263 < 2 0.01706 0.01519 0.01418 < 3 0.00997 0.01462 0.01023 < 4 0.01385 0.01265 0.01664 < 5 0.01000 0.01292 0.01160 < 6 0.01354 0.01029 0.01005 < 7 0.01147 0.01048 0.01061 < 8 0.00993 0.00730 0.01085 < 9 0.01060 0.00857 0.01264 < 10 0.01098 0.00772 0.01165 < 11 0.01370 0.01279 0.01497 < 12 0.01635 0.01509 0.01379 < 13 0.01045 0.00993 0.00762 < 14 0.01987 0.01340 0.01872 < 15 0.00859 0.01107 0.01120 < 16 0.01117 0.00945 0.01261 < 17 0.01209 0.01309 0.00992 < 18 0.00996 0.00799 0.00659 < 19 0.01075 0.01083 0.01180 < 20 0.00894 0.00810 0.00965 < 21 0.01017 0.00705 0.00815 < 22 0.00794 0.00756 0.00760 < 23 0.01269 0.00951 0.01431 < 24 0.00907 0.01207 0.00916 < 25 0.00879 0.01031 0.01163 < 26 0.01552 0.01707 0.01657 < 27 0.01290 0.01546 0.01392 < 28 0.01540 0.01747 0.01653 < 29 0.01225 0.01032 0.01223 < 30 0.01172 0.00988 0.01226 --- > 1 0.01495 0.00948 0.01526 > 2 0.01787 0.01606 0.01145 > 3 0.00863 0.01312 0.01280 > 4 0.00878 0.00787 0.01165 > 5 0.01263 0.01070 0.01175 > 6 0.00627 0.01197 0.01278 > 7 0.01182 0.01123 0.00954 > 8 0.01013 0.01084 0.00870 > 9 0.01319 0.01050 0.01130 > 10 0.01028 0.00911 0.01124 > 11 0.01396 0.01395 0.01229 > 12 0.02081 0.01813 0.01697 > 13 0.01069 0.00682 0.00961 > 14 0.02033 0.01979 0.02098 > 15 0.01153 0.00977 0.01335 > 16 0.00973 0.01092 0.01103 > 17 0.01101 0.01013 0.01140 > 18 0.00939 0.00985 0.01057 > 19 0.00963 0.00995 0.00957 > 20 0.01129 0.01052 0.01211 > 21 0.00660 0.00899 0.00994 > 22 0.00726 0.00807 0.00686 > 23 0.01615 0.01404 0.01088 > 24 0.00972 0.01114 0.00948 > 25 0.01023 0.00971 0.01288 > 26 0.01917 0.01580 0.01769 > 27 0.01058 0.01186 0.01486 > 28 0.02334 0.01921 0.02014 > 29 0.01327 0.01246 0.01032 > 30 0.01140 0.01101 0.00949 Running ‘rtop_sf.R’ [21s/21s] Comparing ‘rtop_sf.Rout’ to ‘rtop_sf.Rout.save’ ... OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE