* using log directory 'd:/RCompile/CRANincoming/R-devel/rtables.Rcheck' * using R Under development (unstable) (2023-08-28 r85029 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'rtables/DESCRIPTION' ... OK * this is package 'rtables' version '0.6.3' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [15s] NOTE Maintainer: 'Joe Zhu ' New maintainer: Joe Zhu Old maintainer(s): Gabriel Becker * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'rtables' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking whether startup messages can be suppressed ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [30s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [52s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [182s] OK Running 'testthat.R' [182s] * checking for unstated dependencies in vignettes ... NOTE '::' or ':::' import not declared from: 'forcats' * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [94s] ERROR Error(s) in re-building vignettes: --- re-building 'advanced_usage.Rmd' using rmarkdown --- finished re-building 'advanced_usage.Rmd' --- re-building 'baseline.Rmd' using rmarkdown --- finished re-building 'baseline.Rmd' --- re-building 'clinical_trials.Rmd' using rmarkdown --- finished re-building 'clinical_trials.Rmd' --- re-building 'custom_appearance.Rmd' using rmarkdown --- finished re-building 'custom_appearance.Rmd' --- re-building 'example_analysis_coxreg.Rmd' using rmarkdown --- finished re-building 'example_analysis_coxreg.Rmd' --- re-building 'exploratory_analysis.Rmd' using rmarkdown Quitting from lines 145-149 [unnamed-chunk-13] (exploratory_analysis.Rmd) Error: processing vignette 'exploratory_analysis.Rmd' failed with diagnostics: there is no package called 'forcats' --- failed re-building 'exploratory_analysis.Rmd' --- re-building 'format_precedence.Rmd' using rmarkdown --- finished re-building 'format_precedence.Rmd' --- re-building 'introduction.Rmd' using rmarkdown --- finished re-building 'introduction.Rmd' --- re-building 'manual_table_construction.Rmd' using rmarkdown --- finished re-building 'manual_table_construction.Rmd' --- re-building 'sorting_pruning.Rmd' using rmarkdown --- finished re-building 'sorting_pruning.Rmd' --- re-building 'split_functions.Rmd' using rmarkdown --- finished re-building 'split_functions.Rmd' --- re-building 'subsetting_tables.Rmd' using rmarkdown --- finished re-building 'subsetting_tables.Rmd' --- re-building 'tabulation_concepts.Rmd' using rmarkdown --- finished re-building 'tabulation_concepts.Rmd' --- re-building 'tabulation_dplyr.Rmd' using rmarkdown --- finished re-building 'tabulation_dplyr.Rmd' --- re-building 'title_footer.Rmd' using rmarkdown --- finished re-building 'title_footer.Rmd' SUMMARY: processing the following file failed: 'exploratory_analysis.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [28s] OK * checking HTML version of manual ... [23s] OK * DONE Status: 1 ERROR, 2 NOTEs