* installing *source* package ‘rstpm2’ ... ** using staged installation ** libs using C compiler: ‘Debian clang version 17.0.5 (1)’ using Fortran compiler: ‘Debian flang-new version 17.0.5 (1)’ using C++ compiler: ‘Debian clang version 17.0.5 (1)’ clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from RcppExports.cpp:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c aft.cpp -o aft.o In file included from aft.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from aft.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c c_optim.cpp -o c_optim.o In file included from c_optim.cpp:1: In file included from ../inst/include/c_optim.h:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from c_optim.cpp:1: In file included from ../inst/include/c_optim.h:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cox_ph.cpp -o cox_ph.o In file included from cox_ph.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from cox_ph.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. flang-new-17 -fpic -g -O2 -Wall -c gaussq2.f -o gaussq2.o flang-new: warning: argument unused during compilation: '-Wall' clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c gsm.cpp -o gsm.o In file included from gsm.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from gsm.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. flang-new-17 -fpic -g -O2 -Wall -c laplace.f90 -o laplace.o flang-new: warning: argument unused during compilation: '-Wall' clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c multistate.cpp -o multistate.o In file included from multistate.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from multistate.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang-17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c package_init.c -o package_init.o clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pluginEstimate2.cpp -o pluginEstimate2.o In file included from pluginEstimate2.cpp:2: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from pluginEstimate2.cpp:2: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c splines.cpp -o splines.o In file included from splines.cpp:1: In file included from ../inst/include/splines.h:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from splines.cpp:1: In file included from ../inst/include/splines.h:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-nmmin.cpp -o test-nmmin.o In file included from test-nmmin.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from test-nmmin.cpp:1: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", test-nmmin.cpp:481:19: warning: 'rstpm2::NelderMead2::calc_hessian' hides overloaded virtual function [-Woverloaded-virtual] 481 | NumericMatrix calc_hessian(optimfn fn, void * ex, int debug) { | ^ ../inst/include/c_optim.h:104:33: note: hidden overloaded virtual function 'rstpm2::NelderMead::calc_hessian' declared here: different number of parameters (2 vs 3) 104 | virtual Rcpp::NumericMatrix calc_hessian(optimfn fn, void * ex); | ^ 4 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o In file included from utils.cpp:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from utils.cpp:1: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vintegrate.cpp -o vintegrate.o In file included from vintegrate.cpp:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from vintegrate.cpp:4: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /srv/hornik/tmp/CRAN/Library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", vintegrate.cpp:1341:17: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1341:17: note: function parameter 'ny' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1341:29: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1341:29: note: function parameter 'ny' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1344:13: warning: variable length arrays are a C99 feature [-Wvla-extension] 1344 | int iwork[limit]; | ^~~~~ vintegrate.cpp:1344:13: note: function parameter 'limit' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:57: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1345:15: warning: variable length arrays are a C99 feature [-Wvla-extension] 1345 | double work[lenw]; | ^~~~ vintegrate.cpp:1345:15: note: read of non-const variable 'lenw' is not allowed in a constant expression vintegrate.cpp:1342:7: note: declared here 1342 | int lenw, ier, neval, last; | ^ vintegrate.cpp:1341:17: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1387:10: note: in instantiation of function template specialization 'vdqagi>' requested here 1387 | return vdqagi(f, bound, inf, epsrel, epsabs, limit, ny); | ^ vintegrate.cpp:1341:17: note: function parameter 'ny' with unknown value cannot be used in a constant expression 1341 | double result[ny], abserr[ny]; | ^ vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1341:29: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1341:29: note: function parameter 'ny' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1344:13: warning: variable length arrays are a C99 feature [-Wvla-extension] 1344 | int iwork[limit]; | ^~~~~ vintegrate.cpp:1344:13: note: function parameter 'limit' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:57: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1345:15: warning: variable length arrays are a C99 feature [-Wvla-extension] 1345 | double work[lenw]; | ^~~~ vintegrate.cpp:1345:15: note: read of non-const variable 'lenw' is not allowed in a constant expression vintegrate.cpp:1342:7: note: declared here 1342 | int lenw, ier, neval, last; | ^ vintegrate.cpp:1341:17: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1439:10: note: in instantiation of function template specialization 'vdqagi (*)(arma::Col)>' requested here 1439 | return vdqagi(test_f2, bound, -1, 1.0e-8, 1.0e-8, 50, 2); | ^ vintegrate.cpp:1341:17: note: function parameter 'ny' with unknown value cannot be used in a constant expression 1341 | double result[ny], abserr[ny]; | ^ vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1341:29: warning: variable length arrays are a C99 feature [-Wvla-extension] 1341 | double result[ny], abserr[ny]; | ^~ vintegrate.cpp:1341:29: note: function parameter 'ny' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:74: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1344:13: warning: variable length arrays are a C99 feature [-Wvla-extension] 1344 | int iwork[limit]; | ^~~~~ vintegrate.cpp:1344:13: note: function parameter 'limit' with unknown value cannot be used in a constant expression vintegrate.cpp:1339:57: note: declared here 1339 | const double epsrel, const double epsabs, const int limit, const int ny) { | ^ vintegrate.cpp:1345:15: warning: variable length arrays are a C99 feature [-Wvla-extension] 1345 | double work[lenw]; | ^~~~ vintegrate.cpp:1345:15: note: read of non-const variable 'lenw' is not allowed in a constant expression vintegrate.cpp:1342:7: note: declared here 1342 | int lenw, ier, neval, last; | ^ 15 warnings generated. clang++-17 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I../inst/include -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/srv/hornik/tmp/CRAN/Library/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c vuniroot.cpp -o vuniroot.o In file included from vuniroot.cpp:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:128: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/routines.h:26: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 53 | Rprintf("%.*s", num, s); | ~~^~ ~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision should have type 'int', but argument has type 'std::streamsize' (aka 'long') [-Wformat] 57 | REprintf("%.*s", num, s); | ~~^~ ~~~ In file included from vuniroot.cpp:2: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:181: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] 30 | Rf_warningcall(call, s.c_str()); | ^~~~~~~~~ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include/Rcpp/print.h:30:26: note: treat the string as an argument to avoid this 30 | Rf_warningcall(call, s.c_str()); | ^ | "%s", 3 warnings generated. clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rstpm2.so RcppExports.o aft.o c_optim.o cox_ph.o gaussq2.o gsm.o laplace.o multistate.o package_init.o pluginEstimate2.o splines.o test-nmmin.o utils.o vintegrate.o vuniroot.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR installing to /srv/hornik/tmp/CRAN/rstpm2.Rcheck/00LOCK-rstpm2/00new/rstpm2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstpm2)