downloading reverse dependencies ... downloading ieegio_0.0.2.tar.gz ... ok installing dependencies ‘filearray’, ‘freesurferformats’, ‘gifti’, ‘readNSx’, ‘rpyANTs’, ‘rpymat’ also installing the dependencies ‘pbdZMQ’, ‘IRkernel’, ‘pkgfilecache’ begin installing package ‘pbdZMQ’ begin installing package ‘pkgfilecache’ begin installing package ‘filearray’ begin installing package ‘gifti’ begin installing package ‘readNSx’ * installing *source* package ‘pkgfilecache’ ... ** package ‘pkgfilecache’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgfilecache) begin installing package ‘freesurferformats’ * installing *source* package ‘gifti’ ... ** package ‘gifti’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gifti) * installing *source* package ‘pbdZMQ’ ... ** package ‘pbdZMQ’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.25... yes checking for zmq... yes checking for zmq_4_1_6... checking for zmq... yes ****************** Results of pbdZMQ package configure ***************** >> GET_PKG_CONFIG = yes >> GET_SYSTEM_ZMQ = yes >> GET_SYSTEM_ZMQ_430 = yes >> PKG_CONFIG = /usr/bin/pkg-config >> SYSTEM_ZMQ_INCLUDEDIR = /usr/include >> SYSTEM_ZMQ_LIBDIR = /usr/lib/x86_64-linux-gnu >> ENABLE_INTERNAL_ZMQ = no >> INTERNAL_ZMQ_INCLUDEDIR = ./zmqsrc/include >> INTERNAL_ZMQ_LIBDIR = ./ >> EXTERNAL_ZMQ_INCLUDE = >> EXTERNAL_ZMQ_LDFLAGS = >> ZMQ_INCLUDE = -I/usr/include >> ZMQ_LDFLAGS = -L/usr/lib/x86_64-linux-gnu -lzmq >> EXT_LIBS = >> ZMQ_POLLER = select ************************************************************************ configure: creating ./config.status config.status: creating src/Makevars configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/build_zmq config.status: creating R/zzz.r ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwR70xL/R.INSTALL32a4f27e3176e2/pbdZMQ/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_context.c -o R_zmq_context.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_socket.c -o R_zmq_socket.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_sendrecv.c -o R_zmq_sendrecv.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_utility.c -o R_zmq_utility.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_message.c -o R_zmq_message.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_transfer.c -o R_zmq_transfer.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c shellexec_wcc.c -o shellexec_wcc.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_zmq_poll.c -o R_zmq_poll.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c R_cxx_dummy.cc -o R_cxx_dummy.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o pbdZMQ.so R_zmq_context.o R_zmq_socket.o R_zmq_sendrecv.o R_zmq_utility.o R_zmq_message.o R_zmq_transfer.o shellexec_wcc.o R_zmq_poll.o R_cxx_dummy.o zzz.o -L/usr/lib/x86_64-linux-gnu -lzmq -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwR70xL/R.INSTALL32a4f27e3176e2/pbdZMQ/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pbdZMQ/00new/pbdZMQ ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pbdZMQ) begin installing package ‘IRkernel’ * installing *source* package ‘IRkernel’ ... ** package ‘IRkernel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRkernel) begin installing package ‘rpymat’ * installing *source* package ‘freesurferformats’ ... ** package ‘freesurferformats’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freesurferformats) * installing *source* package ‘readNSx’ ... ** package ‘readNSx’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3A5gb1/R.INSTALL32a4f56fedf1bc/readNSx/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c cpp11.cpp -o cpp11.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rawToSEXP.cpp -o rawToSEXP.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c readBCI2R.cpp -o readBCI2R.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c readNSxDataPacket.cpp -o readNSxDataPacket.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o readNSx.so cpp11.o rawToSEXP.o readBCI2R.o readNSxDataPacket.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3A5gb1/R.INSTALL32a4f56fedf1bc/readNSx/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-readNSx/00new/readNSx/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readNSx) * installing *source* package ‘rpymat’ ... ** package ‘rpymat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpymat) begin installing package ‘rpyANTs’ * installing *source* package ‘rpyANTs’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rpyANTs) * installing *source* package ‘filearray’ ... ** package ‘filearray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3ZTW6p/R.INSTALL32a4f35fcada8/filearray/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c collapse.cpp -o collapse.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c conversion.cpp -o conversion.o conversion.cpp: In function ‘SEXPREC* convert_as2(SEXP, SEXP, SEXPTYPE)’: conversion.cpp:293:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 293 | if( TYPEOF(y) != type ){ | ~~~~~~~~~~^~~~~~~ conversion.cpp: In function ‘void realToFloat(double*, float*, size_t)’: conversion.cpp:405:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 405 | for(R_xlen_t ii = 0; ii < nelem; ii++, x++, y++){ | ~~~^~~~~~~ conversion.cpp: In function ‘void floatToReal(float*, double*, size_t)’: conversion.cpp:415:29: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 415 | for(R_xlen_t ii = 0; ii < nelem; ii++, y++, x++){ | ~~~^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c core.cpp -o core.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c interfaces.cpp -o interfaces.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c load.cpp -o load.o load.cpp: In function ‘SEXPREC* FARR_subset_sequential(const std::string&, const int64_t&, SEXP, SEXPTYPE, SEXP, int64_t, int64_t)’: load.cpp:66:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘SEXPTYPE’ {aka ‘unsigned int’} [-Wsign-compare] 66 | if( TYPEOF(ret) != array_memory_sxptype(array_type) ){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = Rcomplex; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = unsigned char; B = unsigned char; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = float; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = double; B = double; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_mmap(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:543:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 543 | this->operator_mmap(begin, end); | ~~~~~~^~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:342:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 342 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ load.cpp: In instantiation of ‘void FARRSubsetter::operator_fread(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’: load.cpp:545:19: required from ‘void FARRSubsetter::operator()(std::size_t, std::size_t) [with T = int; B = int; std::size_t = long unsigned int]’ 545 | this->operator_fread(begin, end); | ~~~~~~^~~~~~~~~~~~~~ load.cpp:540:10: required from here 540 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ load.cpp:443:37: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(R_xlen_t ii = begin; ii < end; ii++){ | ~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c map.cpp -o map.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c mapreduce.cpp -o mapreduce.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c save.cpp -o save.o save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = unsigned char; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = float; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = double; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ save.cpp: In instantiation of ‘void FARRAssigner::operator()(std::size_t, std::size_t) [with T = int; std::size_t = long unsigned int]’: save.cpp:358:10: required from here 358 | void operator()(std::size_t begin, std::size_t end) { | ^~~~~~~~ save.cpp:364:41: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | for(R_xlen_t iter = begin; iter < end; iter++){ | ~~~~~^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c serialize.cpp -o serialize.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c threadSettings.cpp -o threadSettings.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c utils.cpp -o utils.o utils.cpp: In function ‘void set_buffer(SEXP, int, size_t, int)’: utils.cpp:42:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 42 | if( buf_bytes > buffer_bytes ){ | ~~~~~~~~~~^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o filearray.so RcppExports.o collapse.o conversion.o core.o interfaces.o load.o map.o mapreduce.o save.o serialize.o threadSettings.o utils.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3ZTW6p/R.INSTALL32a4f35fcada8/filearray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-filearray/00new/filearray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filearray) checking rpyANTs_0.0.4.tar.gz ... checking ieegio_0.0.2.tar.gz ... Depends: Package: rpyANTs Imports: grDevices, rpymat (>= 0.1.6), reticulate (>= 1.26), RNifti (>= 1.5.0) Timings: user system elapsed rpyANTs 50.136 5.762 57.473 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: rpyANTs ... OK rdepends_ieegio ... OK