* using log directory ‘/srv/hornik/tmp/CRAN/robustbase.Rcheck’ * using R Under development (unstable) (2024-08-15 r87022) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘robustbase/DESCRIPTION’ ... OK * this is package ‘robustbase’ version ‘0.99-4’ * checking CRAN incoming feasibility ... [5s/7s] Note_to_CRAN_maintainers Maintainer: ‘Martin Maechler ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘robustbase’ can be installed ... [13s/12s] OK * used C compiler: ‘Debian clang version 18.1.8 (9)’ * used Fortran compiler: ‘Debian flang-new version 18.1.8 (9)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [13s/13s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking usage of KIND in Fortran files ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [18s/18s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [42s/42s] OK Running ‘LTS-specials.R’ [0s/0s] Running ‘MCD-specials.R’ [0s/0s] Comparing ‘MCD-specials.Rout’ to ‘MCD-specials.Rout.save’ ... OK Running ‘MT-tst.R’ [3s/3s] Running ‘NAcoef.R’ [0s/0s] Comparing ‘NAcoef.Rout’ to ‘NAcoef.Rout.save’ ... OK Running ‘OGK-ex.R’ [0s/0s] Comparing ‘OGK-ex.Rout’ to ‘OGK-ex.Rout.save’ ... OK Running ‘Qn-Sn-plots.R’ [0s/0s] Running ‘Rsquared.R’ [0s/0s] Comparing ‘Rsquared.Rout’ to ‘Rsquared.Rout.save’ ... OK Running ‘binom-ni-small.R’ [0s/0s] Comparing ‘binom-ni-small.Rout’ to ‘binom-ni-small.Rout.save’ ... OK Running ‘binom-no-x.R’ [0s/0s] Running ‘comedian-tst.R’ [0s/0s] Running ‘exact-fit-categorical.R’ [0s/0s] Running ‘glmrob-1.R’ [3s/3s] Running ‘glmrob-specials.R’ [0s/0s] Running ‘huber-etc.R’ [0s/0s] Comparing ‘huber-etc.Rout’ to ‘huber-etc.Rout.save’ ... OK Running ‘large-values.R’ [0s/0s] Running ‘lmrob-data.R’ [1s/1s] Running ‘lmrob-ex12.R’ [1s/1s] Running ‘lmrob-methods.R’ [0s/0s] Comparing ‘lmrob-methods.Rout’ to ‘lmrob-methods.Rout.save’ ... OK Running ‘lmrob-psifns.R’ [2s/2s] Comparing ‘lmrob-psifns.Rout’ to ‘lmrob-psifns.Rout.save’ ...12c12 < [1] FALSE --- > [1] TRUE Running ‘m-s-estimator.R’ [1s/1s] Running ‘mc-etc.R’ [0s/0s] Running ‘mc-strict.R’ [6s/6s] Running ‘nlregrob-tst.R’ [6s/6s] Running ‘nlrob-tst.R’ [1s/1s] Running ‘poisson-ex.R’ [0s/0s] Running ‘psi-rho-etc.R’ [0s/0s] Comparing ‘psi-rho-etc.Rout’ to ‘psi-rho-etc.Rout.save’ ... OK Running ‘small-sample.R’ [3s/3s] Comparing ‘small-sample.Rout’ to ‘small-sample.Rout.save’ ... OK Running ‘subsample.R’ [3s/3s] Running ‘tlts.R’ [0s/0s] Comparing ‘tlts.Rout’ to ‘tlts.Rout.save’ ... OK Running ‘tmcd.R’ [3s/3s] Running ‘weights.R’ [0s/0s] Comparing ‘weights.Rout’ to ‘weights.Rout.save’ ... OK Running ‘wgt-himed-xtra.R’ [1s/1s] Running ‘wgt-himed.R’ [0s/0s] Comparing ‘wgt-himed.Rout’ to ‘wgt-himed.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [18s/18s] WARNING Error(s) in re-building vignettes: ... --- re-building ‘fastMcd-kmini.Rnw’ using Sweave Loading required package: robustbase --- finished re-building ‘fastMcd-kmini.Rnw’ --- re-building ‘lmrob_simulation.Rnw’ using Sweave Loading required package: xtable Loading required package: robustbase Loading required package: ggplot2 Loading required package: GGally Loading required package: grid Loading required package: reshape2 Using method.cov, Error, Psi as id variables Warning: Removed 1 row containing missing values or values outside the scale range (`geom_line()`). Warning: Removed 2 rows containing missing values or values outside the scale range (`geom_line()`). --- finished re-building ‘lmrob_simulation.Rnw’ --- re-building ‘psi_functions.Rnw’ using Sweave Loading required package: robustbase Error: processing vignette 'psi_functions.Rnw' failed with diagnostics: Running 'texi2dvi' on 'psi_functions.tex' failed. LaTeX errors: ! Undefined control sequence. \@currentHref ->definition.\theHdefinition l.58 \begin{definition}\label{def.psi} ! Emergency stop. \@currentHref ->definition.\theHdefinition l.58 \begin{definition}\label{def.psi} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘psi_functions.Rnw’ SUMMARY: processing the following file failed: ‘psi_functions.Rnw’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [4s/4s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING