R Under development (unstable) (2024-08-21 r87038 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> suppressPackageStartupMessages(library("survey"))
> library("robsurvey", quietly = TRUE)
> attach(workplace)
> 
> # design object
> dn <- svydesign(ids = ~ID, strata = ~strat, fpc = ~fpc, weights = ~weight,
+     data = workplace)
> 
> source("check_functions.R")
> 
> #===============================================================================
> # 1 Test against MASS::rlm
> #===============================================================================
> if (requireNamespace("MASS", quietly = TRUE)) {
+     library(MASS)
+     # make a copy of MASS::rlm
+     rlm_mod <- MASS:::rlm.default
+     # replace wmad-function with our weighted mad
+     body(rlm_mod)[[4]] <- substitute(wmad <- function(x, w) weighted_mad(x, w))
+ 
+     #---------------------------------------------------------------------------
+     # Huber regression M-estimator
+     est <- svyreg_huberM(payroll ~ employment, dn, k = 1.345, tol = 1e-9)
+     ref <- rlm_mod(x = est$model$x, y = est$model$y, weights = est$model$w,
+         k = 1.345, scale.est = "MAD", method = "M", wt.method = "case",
+         acc = 1e-9, maxit = 50, test.vec = "coef")
+     all_equal(coef(est), coef(ref), tolerance = 1e-7,
+         label = "Huber regression regression: coefficients")
+     # model-based covariance matrix
+     all_equal(vcov(est, "model"), vcov(ref), tolerance = 1e-7,
+         label = "Huber regression M-est: model-based cov")
+     # design-based covariance matrix (test against fixed values)
+     ref <- matrix(c(61704317.084028, -3367311.1407500, -3367311.140750,
+         870905.6027803), ncol = 2)
+     colnames(ref) <- rownames(ref) <- c("(Intercept)", "employment")
+     all_equal(vcov(est), ref,
+         label = "Huber regression M-est: design-based cov")
+ 
+     #---------------------------------------------------------------------------
+     # Tukey regression M-estimator
+     est <- svyreg_tukeyM(payroll ~ employment, dn, k = 4.6, tol = 1e-9)
+     ref <- rlm_mod(x = est$model$x, y = est$model$y, weights = est$model$w,
+         c = 4.6, psi = psi.bisquare,  scale.est = "MAD", method = "M",
+         wt.method = "case", acc = 1e-9, maxit = 50, test.vec = "coef")
+     all_equal(coef(est), coef(ref), tolerance = 1e-7,
+         label = "Tukey regression regression: coefficients")
+     # model-based covariance matrix
+     all_equal(vcov(est, "model"), vcov(ref), tolerance = 1e-7,
+         label = "Tukey regression M-est: model-based cov")
+     # design-based covariance matrix (test against fixed values)
+     ref <- matrix(c(43513457.824988, -1421272.808406, -1421272.808406,
+         589121.583227), ncol = 2)
+     colnames(ref) <- rownames(ref) <- c("(Intercept)", "employment")
+     all_equal(vcov(est), ref,
+         label = "Tukey regression M-est: design-based cov")
+ }
> 
> #===============================================================================
> # 2 Test against survey::svyglm
> #===============================================================================
> # survey weighted regression
> ref <- svyglm(payroll ~ employment, dn)
> est <- svyreg(payroll ~ employment, dn)
> 
> all_equal(coef(est), coef(ref),
+     label = "Survey weighted regression: coefficients")
> # design-based covariance matrix (test against survey::svyglm)
> all_equal(vcov(est, "design"), vcov(ref),
+     label = "Survey weighted regression: design-based cov")
> # model-based covariance matrix (test against MASS::rlm)
> ref <- rlm(payroll ~ employment, weights = weights(dn), data = dn$variables,
+     method = "M", wt.method = "case", k = 1000)
> all_equal(vcov(est, "model"), vcov(ref),
+     label = "Survey weighted regression: model-based cov")
> 
> #-------------------------------------------------------------------------------
> # Mallows regression GM-estimator: Huber psi
> xwgt <- simpsonWgt(employment / weighted_median(employment, weight), a = 1,
+     b = 20)
> est <- svyreg_huberGM(payroll ~ employment, dn, k = 1.345, type = "Mallows",
+     xwgt = xwgt)
> all_equal(coef(est),
+     c("(Intercept)" = 7843.4909, employment = 14425.3658),
+     tolerance = 1e-4, label = "Huber Mallows regression GM-est")
> # model-based covariance matrix
> ref <- matrix(c(35768.4163, -572.71408, -572.71408, 52.40226), ncol = 2)
> colnames(ref) <- c("(Intercept)", "employment")
> rownames(ref) <- c("(Intercept)", "employment")
> all_equal(vcov(est, "model"), ref, tolerance = 1e-4,
+     label = "Huber Mallows regression GM-est: model-based cov")
> 
> #-------------------------------------------------------------------------------
> # Schweppe regression GM-estimator: Huber psi
> xwgt <- simpsonWgt(employment / weighted_median(employment, weight), a = 1,
+     b = 20)
> est <- svyreg_huberGM(payroll ~ employment, dn, k = 1.345, type = "Schweppe",
+     xwgt = xwgt)
> all_equal(coef(est),
+     c("(Intercept)" = 7769.1899, employment = 14424.6617),
+     tolerance = 1e-4, label = "Huber Schweppe regression GM-est")
> # model-based covariance matrix
> ref <- matrix(c(35697.6180, -620.1554, -620.1554, 57.4449), ncol = 2)
> colnames(ref) <- c("(Intercept)", "employment")
> rownames(ref) <- c("(Intercept)", "employment")
> all_equal(vcov(est, "model"), ref, tolerance = 1e-4,
+     label = "Huber Schweppe regression GM-est: model-based cov")
> 
> proc.time()
   user  system elapsed 
   1.57    0.29    1.87