downloading reverse dependencies ‘CommEcol’, ‘phylobase’, ‘rotl’

trying URL 'file:///data/Repositories/CRAN/src/contrib/CommEcol_1.8.1.tar.gz'
trying URL 'file:///data/Repositories/CRAN/src/contrib/phylobase_0.8.12.tar.gz'
trying URL 'file:///data/Repositories/CRAN/src/contrib/rotl_3.1.1.tar.gz'

installing dependencies ‘adespatial’, ‘rncl’

begin installing package ‘rncl’
* installing *source* package ‘rncl’ ...
** this is package ‘rncl’ version ‘0.8.9’
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHIObuY/R.INSTALL921f812526137/rncl/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GetNCL.cpp -o GetNCL.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c collapse_singles.cpp -o collapse_singles.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsblock.cpp -o nxsblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxscharactersblock.cpp -o nxscharactersblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsdatablock.cpp -o nxsdatablock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsdistancedatum.cpp -o nxsdistancedatum.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsdistancesblock.cpp -o nxsdistancesblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsemptyblock.cpp -o nxsemptyblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsexception.cpp -o nxsexception.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsmultiformat.cpp -o nxsmultiformat.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxspublicblocks.cpp -o nxspublicblocks.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsreader.cpp -o nxsreader.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxssetreader.cpp -o nxssetreader.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsstring.cpp -o nxsstring.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxstaxablock.cpp -o nxstaxablock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxstoken.cpp -o nxstoken.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxstreesblock.cpp -o nxstreesblock.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nxsunalignedblock.cpp -o nxsunalignedblock.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -DHAVE_INTTYPES_H -DASSERTS_TO_EXCEPTIONS -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rncl_init.c -o rncl_init.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rncl.so GetNCL.o RcppExports.o collapse_singles.o nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancedatum.o nxsdistancesblock.o nxsemptyblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxaassociationblock.o nxstaxablock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o rncl_init.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHIObuY/R.INSTALL921f812526137/rncl/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rncl/00new/rncl/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rncl)
begin installing package ‘adespatial’
* installing *source* package ‘adespatial’ ...
** this is package ‘adespatial’ version ‘0.3-28’
** package ‘adespatial’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’
using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoWsy0x/R.INSTALL9237b12db8857/adespatial/src'
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c WRperiodogram.c -o WRperiodogram.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c adesub.c -o adesub.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c betadiv.c -o betadiv.o
betadiv.c: In function ‘euclidean’:
betadiv.c:36:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   36 |     for (i = 0; i < I; i++)
      |     ^~~
In file included from betadiv.c:7:
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:42:9: note: in expansion of macro ‘UNPROTECT’
   42 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘manhattan’:
betadiv.c:476:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  476 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:483:9: note: in expansion of macro ‘UNPROTECT’
  483 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘canberra’:
betadiv.c:506:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  506 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:530:9: note: in expansion of macro ‘UNPROTECT’
  530 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘kulczynski’:
betadiv.c:549:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  549 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:563:9: note: in expansion of macro ‘UNPROTECT’
  563 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘divergence’:
betadiv.c:586:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  586 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:608:9: note: in expansion of macro ‘UNPROTECT’
  608 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘modmean’:
betadiv.c:630:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  630 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:646:9: note: in expansion of macro ‘UNPROTECT’
  646 |         UNPROTECT(4);
      |         ^~~~~~~~~
betadiv.c: In function ‘whittaker’:
betadiv.c:701:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  701 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:718:9: note: in expansion of macro ‘UNPROTECT’
  718 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘wishart’:
betadiv.c:737:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  737 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:752:9: note: in expansion of macro ‘UNPROTECT’
  752 |         UNPROTECT(3);
      |         ^~~~~~~~~
betadiv.c: In function ‘percentdiff’:
betadiv.c:982:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  982 |     for (i = 0; i < I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:1000:9: note: in expansion of macro ‘UNPROTECT’
 1000 |         UNPROTECT(6);
      |         ^~~~~~~~~
betadiv.c: In function ‘binary_D’:
betadiv.c:1020:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 |     for (i=0; i<I; i++)
      |     ^~~
/home/hornik/tmp/R/include/Rinternals.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  389 | #define UNPROTECT(n)    Rf_unprotect(n)
      |                         ^~~~~~~~~~~~
betadiv.c:1035:9: note: in expansion of macro ‘UNPROTECT’
 1035 |         UNPROTECT(4);
      |         ^~~~~~~~~
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c buildbinary.c -o buildbinary.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c constr.hclust.c -o constr.hclust.o
constr.hclust.c: In function ‘initNNlist’:
constr.hclust.c:110:15: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
  110 |     nn_idx[i] = nn;
      |     ~~~~~~~~~~^~~~
constr.hclust.c:100:25: note: ‘nn’ was declared here
  100 |   unsigned int i, j, k, nn;
      |                         ^~
constr.hclust.c: In function ‘updateNNlist’:
constr.hclust.c:131:13: warning: ‘nn’ may be used uninitialized [-Wmaybe-uninitialized]
  131 |   nn_idx[i] = nn;
      |   ~~~~~~~~~~^~~~
constr.hclust.c:122:22: note: ‘nn’ was declared here
  122 |   unsigned int j, k, nn;
      |                      ^~
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c forward.c -o forward.o
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c geoddist.f -o geoddist.o
f951: Warning: Nonconforming tab character in column 1 of line 62 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 63 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 64 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 65 [-Wtabs]
f951: Warning: Nonconforming tab character in column 1 of line 66 [-Wtabs]
geoddist.f:67:14:

   67 |       end if
      |                 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran-15  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c geodistv.f -o geodistv.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c stipermute.c -o stipermute.o
gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c testsmoran.c -o testsmoran.o
gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o adespatial.so WRperiodogram.o adesub.o betadiv.o buildbinary.o constr.hclust.o forward.o geoddist.o geodistv.o init.o stipermute.o testsmoran.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoWsy0x/R.INSTALL9237b12db8857/adespatial/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adespatial/00new/adespatial/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adespatial)

checking rncl_0.8.9.tar.gz ...
checking phylobase_0.8.12.tar.gz ...
checking CommEcol_1.8.1.tar.gz ...
checking rotl_3.1.1.tar.gz ...

Depends:
Package: rncl
  Depends: R (>= 3.1.1)
  Imports: Rcpp (>= 0.11.0), progress (>= 1.1.2), stats
  LinkingTo: Rcpp, progress

Timings:
        user system elapsed
rncl 107.948  8.452 119.624

Results:
Check status summary:
                  OK
  Source packages  1
  Reverse depends  3

Check results summary:
rncl ... OK
rdepends_CommEcol ... OK
rdepends_phylobase ... OK
rdepends_rotl ... OK

Check results changes:
Package: phylobase
Check: CRAN incoming feasibility
Old result: NOTE