downloading reverse dependencies ...
downloading PTXQC_1.0.17.tar.gz ... ok

installing dependencies ‘R6P’, ‘rmzqc’

also installing the dependency ‘collections’

begin installing package ‘collections’
* installing *source* package ‘collections’ ...
** package ‘collections’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.1.0-6) 13.1.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpPAijN2/R.INSTALL2307b951e46ea1/collections/src'
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tommyds/tommy.c -o tommyds/tommy.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c collections.c -o collections.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c deque.c -o deque.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c dict.c -o dict.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c priority_queue.c -o priority_queue.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c queue.c -o queue.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c stack.c -o stack.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c xxh.c -o xxh.o
gcc-13  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utils.c -o utils.o
gcc-13 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o collections.so tommyds/tommy.o collections.o deque.o dict.o priority_queue.o queue.o stack.o xxh.o utils.o -L/home/hornik/tmp/R/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpPAijN2/R.INSTALL2307b951e46ea1/collections/src'
installing to /home/hornik/tmp/CRAN/Library/00LOCK-collections/00new/collections/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (collections)
begin installing package ‘R6P’
* installing *source* package ‘R6P’ ...
** package ‘R6P’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (R6P)
begin installing package ‘rmzqc’
* installing *source* package ‘rmzqc’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7096 bytes
==================================================
downloaded 7096 bytes

Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.129/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.129/psi-ms.obo'
Content type 'application/octet-stream' length 949616 bytes (927 KB)
==================================================
downloaded 927 KB

** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rmzqc)

checking rmzqc_0.5.1.tar.gz ...
checking PTXQC_1.0.17.tar.gz ...

Depends:
Package: rmzqc
  Imports: jsonlite, jsonvalidate, knitr, methods, ontologyIndex,
    rmarkdown, R6, R6P, testthat, tools

Timings:
        user system elapsed
rmzqc 39.852  4.524  48.977

Results:
Check status summary:
                  NOTE OK
  Source packages    1  0
  Reverse depends    0  1

Check results summary:
rmzqc ... NOTE
* checking CRAN incoming feasibility ... [4s/5s] NOTE
rdepends_PTXQC ... OK

Check results changes:
Package: PTXQC [Old version: 1.0.16, New version: 1.0.17]
Check: tests
Old result: ERROR
New result: OK