* using log directory ‘/srv/hornik/tmp/CRAN_pretest/rmdcev.Rcheck’
* using R Under development (unstable) (2026-02-19 r89439)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-20 16:43:05 UTC
* checking for file ‘rmdcev/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rmdcev’ version ‘1.3.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Patrick Lloyd-Smith <patrick.lloydsmith@usask.ca>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Bhat (14:652)
  MDCEV (14:166)
  Pinjari (14:640)

Unknown, possibly misspelled, fields in DESCRIPTION:
  ‘Remotes’

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-02-25 as issues were not corrected
    despite reminders.

Suggests or Enhances not in mainstream repositories:
  cmdstanr

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

Found the following (possibly) invalid URLs:
  URL: http://donnees.ec.gc.ca/data/managementoversight/systems/canadian-nature-survey-2012/ (moved to https://data-donnees.az.ec.gc.ca/data/managementoversight/systems/canadian-nature-survey-2012/)
    From: man/data_rec.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://publications.gc.ca/site/eng/9.698872/publication.html
    From: man/data_rec.Rd
    Status: Error
    Message: SSL peer certificate or SSH remote key was not OK [publications.gc.ca]:
      SSL certificate verification failed: certificate signer not trusted. (CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none)
  URL: http://www.apollochoicemodelling.com/ (moved to https://www.apollochoicemodelling.com/)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://www.caee.utexas.edu/prof/bhat/MDCEV_Forecasting.html (moved to http://caee.webhost.utexas.edu/prof/bhat/MDCEV_Forecasting.html)
    From: README.md
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘cmdstanr’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rmdcev’ can be installed ... [209s/206s] WARNING
Found the following significant warnings:
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function Shuffle_rng
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function DrawMlhs_rng
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function DrawError_rng
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function CalcAltOrder
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function SortParmMatrix
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function ComputeE
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function MarshallianDemand
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function ComputeUtilJ
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function ComputeUtilM
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function ComputeKtUtilM
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function HicksianDemand
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function CalcWTP_rng
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function CalcMarshallianDemand_rng
  Warning: Unable to parse C++ default value 'nullptr' for argument pstream__ of function CalcmdemandOne_rng
See ‘/srv/hornik/tmp/CRAN_pretest/rmdcev.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 21.1.8 (3)’
* checking C++ specification ... INFO
  specified C++17
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [49s/49s] ERROR
  Running ‘testthat.R’ [49s/49s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > Sys.setenv("R_TESTS" = "")
  > 
  > library(testthat)
  > library(rmdcev)
  Loading required package: Rcpp
  This is rmdcev version 1.3.0
  > test_check("rmdcev")
  
  SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.001547 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 15.47 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.031 seconds (Warm-up)
  Chain 1:                0.008 seconds (Sampling)
  Chain 1:                0.039 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.001139 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.39 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.011 seconds (Warm-up)
  Chain 1:                0.012 seconds (Sampling)
  Chain 1:                0.023 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.002559 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 25.59 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.565 seconds (Warm-up)
  Chain 1:                0.04 seconds (Sampling)
  Chain 1:                0.605 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
  Chain 1: Rejecting initial value:
  Chain 1:   Log probability evaluates to log(0), i.e. negative infinity.
  Chain 1:   Stan can't start sampling from this initial value.
  Chain 1: 
  Chain 1: Gradient evaluation took 0.002336 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 23.36 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.109 seconds (Warm-up)
  Chain 1:                0.033 seconds (Sampling)
  Chain 1:                0.142 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.001891 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 18.91 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.264 seconds (Warm-up)
  Chain 1:                0.012 seconds (Sampling)
  Chain 1:                0.276 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.001192 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 11.92 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.017 seconds (Warm-up)
  Chain 1:                0.008 seconds (Sampling)
  Chain 1:                0.025 seconds (Total)
  Chain 1: 
  
  SAMPLING FOR MODEL 'mdcev_rp' NOW (CHAIN 1).
  Chain 1: 
  Chain 1: Gradient evaluation took 0.001358 seconds
  Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 13.58 seconds.
  Chain 1: Adjust your expectations accordingly!
  Chain 1: 
  Chain 1: 
  Chain 1: WARNING: No variance estimation is
  Chain 1:          performed for num_warmup < 20
  Chain 1: 
  Chain 1: Iteration: 1 / 10 [ 10%]  (Warmup)
  Chain 1: Iteration: 2 / 10 [ 20%]  (Warmup)
  Chain 1: Iteration: 3 / 10 [ 30%]  (Warmup)
  Chain 1: Iteration: 4 / 10 [ 40%]  (Warmup)
  Chain 1: Iteration: 5 / 10 [ 50%]  (Warmup)
  Chain 1: Iteration: 6 / 10 [ 60%]  (Sampling)
  Chain 1: Iteration: 7 / 10 [ 70%]  (Sampling)
  Chain 1: Iteration: 8 / 10 [ 80%]  (Sampling)
  Chain 1: Iteration: 9 / 10 [ 90%]  (Sampling)
  Chain 1: Iteration: 10 / 10 [100%]  (Sampling)
  Chain 1: 
  Chain 1:  Elapsed Time: 0.009 seconds (Warm-up)
  Chain 1:                0.009 seconds (Sampling)
  Chain 1:                0.018 seconds (Total)
  Chain 1: 
  Saving _problems/test-data-36.R
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 116 ]
  
  ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
  • On CRAN (5): 'test-cmdstanr.R:15:2', 'test-cmdstanr.R:34:2',
    'test-cmdstanr.R:48:2', 'test-cmdstanr.R:67:2', 'test-cmdstanr.R:91:2'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-data.R:31:2'): non-id names ────────────────────────────────────
  Error in `RunCmdStanOptimizing(stan_data_temp, "mdcev", mle_options, ...)`: Package 'cmdstanr' is required for backend = 'cmdstanr'.
  Backtrace:
      ▆
   1. └─rmdcev::mdcev(...) at test-data.R:31:9
   2.   └─rmdcev:::maxlikeMDCEV(stan_data, mle_options, parms_info, ...)
   3.     └─rmdcev:::RunCmdStanOptimizing(...)
  
  [ FAIL 1 | WARN 0 | SKIP 5 | PASS 116 ]
  Error:
  ! Test failures.
  Execution halted
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE