downloading reverse dependencies ... downloading arealDB_0.9.4.tar.gz ... ok downloading canadamaps_0.1.tar.gz ... ok downloading chilemapas_0.3.0.tar.gz ... ok downloading cshapes_2.0.tar.gz ... ok downloading dots_0.0.3.tar.gz ... ok downloading MazamaSpatialUtils_0.8.7.tar.gz ... ok downloading micromapST_3.1.1.tar.gz ... ok downloading sugarbag_0.1.6.tar.gz ... ok downloading alarmdata_0.2.1.tar.gz ... ok downloading csdata_2024.4.26.tar.gz ... ok downloading dawaR_0.3.1.tar.gz ... ok downloading FedData_4.3.0.tar.gz ... ok downloading ipumsr_0.9.0.tar.gz ... ok downloading leafdown_1.2.0.tar.gz ... ok downloading redist_4.3.1.tar.gz ... ok downloading StratifiedSampling_0.4.2.tar.gz ... ok downloading tmaptools_3.3.tar.gz ... ok installing dependencies ‘arcgislayers’, ‘BalancedSampling’, ‘broom’, ‘censable’, ‘dataverse’, ‘geomander’, ‘ggpattern’, ‘hipread’, ‘htmltools’, ‘MazamaCoreUtils’, ‘ontologics’, ‘OpenStreetMap’, ‘redist’, ‘redistmetrics’, ‘rmapshaper’, ‘tabshiftr’, ‘tidyRSS’, ‘tinytiger’, ‘wacolors’ also installing the dependencies ‘rdflib’, ‘geohashTools’, ‘censusapi’, ‘baf’, ‘arcgisutils’, ‘arcpbf’, ‘gridpattern’ begin installing package ‘rdflib’ begin installing package ‘geohashTools’ begin installing package ‘censusapi’ begin installing package ‘baf’ begin installing package ‘arcgisutils’ begin installing package ‘gridpattern’ begin installing package ‘tabshiftr’ begin installing package ‘wacolors’ begin installing package ‘dataverse’ begin installing package ‘redistmetrics’ begin installing package ‘tinytiger’ begin installing package ‘tidyRSS’ begin installing package ‘hipread’ begin installing package ‘BalancedSampling’ begin installing package ‘OpenStreetMap’ begin installing package ‘rmapshaper’ begin installing package ‘broom’ begin installing package ‘htmltools’ * installing *source* package ‘censusapi’ ... ** this is package ‘censusapi’ version ‘0.9.0’ ** package ‘censusapi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censusapi) * installing *source* package ‘geohashTools’ ... ** this is package ‘geohashTools’ version ‘0.3.3’ ** package ‘geohashTools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLdUSrU/R.INSTALL25a3d57ea1da5f/geohashTools/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c decode.c -o decode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c encode.c -o encode.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c neighbors.c -o neighbors.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o geohashTools.so decode.o encode.o init.o neighbors.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLdUSrU/R.INSTALL25a3d57ea1da5f/geohashTools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-geohashTools/00new/geohashTools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geohashTools) * installing *source* package ‘tinytiger’ ... ** this is package ‘tinytiger’ version ‘0.0.11’ ** package ‘tinytiger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinytiger) begin installing package ‘censable’ * installing *source* package ‘dataverse’ ... ** this is package ‘dataverse’ version ‘0.3.16’ ** package ‘dataverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dataverse) * installing *source* package ‘rmapshaper’ ... ** this is package ‘rmapshaper’ version ‘0.6.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmapshaper) * installing *source* package ‘baf’ ... ** this is package ‘baf’ version ‘0.0.4’ ** package ‘baf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baf) * installing *source* package ‘wacolors’ ... ** this is package ‘wacolors’ version ‘0.3.1’ ** package ‘wacolors’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wacolors) * installing *source* package ‘tidyRSS’ ... ** this is package ‘tidyRSS’ version ‘2.0.7’ ** package ‘tidyRSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyRSS) * installing *source* package ‘htmltools’ ... ** this is package ‘htmltools’ version ‘0.5.9’ ** package ‘htmltools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn1zKpt/R.INSTALL25a40731d4cc5a/htmltools/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c template.c -o template.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o htmltools.so init.o template.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn1zKpt/R.INSTALL25a40731d4cc5a/htmltools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-htmltools/00new/htmltools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmltools) begin installing package ‘MazamaCoreUtils’ * installing *source* package ‘rdflib’ ... ** this is package ‘rdflib’ version ‘0.2.9’ ** package ‘rdflib’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdflib) begin installing package ‘ontologics’ * installing *source* package ‘gridpattern’ ... ** this is package ‘gridpattern’ version ‘1.3.1’ ** package ‘gridpattern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridpattern) begin installing package ‘ggpattern’ * installing *source* package ‘censable’ ... ** this is package ‘censable’ version ‘0.0.8’ ** package ‘censable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censable) begin installing package ‘geomander’ * installing *source* package ‘tabshiftr’ ... ** this is package ‘tabshiftr’ version ‘0.4.1’ ** package ‘tabshiftr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tabshiftr) * installing *source* package ‘MazamaCoreUtils’ ... ** this is package ‘MazamaCoreUtils’ version ‘0.5.3’ ** package ‘MazamaCoreUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MazamaCoreUtils) * installing *source* package ‘broom’ ... ** this is package ‘broom’ version ‘1.0.11’ ** package ‘broom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (broom) * installing *source* package ‘ggpattern’ ... ** this is package ‘ggpattern’ version ‘1.2.1’ ** package ‘ggpattern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpattern) * installing *source* package ‘ontologics’ ... ** this is package ‘ontologics’ version ‘0.7.4’ ** package ‘ontologics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ontologics) * installing *source* package ‘OpenStreetMap’ ... ** this is package ‘OpenStreetMap’ version ‘0.4.1’ ** package ‘OpenStreetMap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘raster’ with signature ‘"osmtile"’: no definition for class “osmtile” in method for ‘raster’ with signature ‘"OpenStreetMap"’: no definition for class “OpenStreetMap” ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStreetMap) * installing *source* package ‘geomander’ ... ** this is package ‘geomander’ version ‘2.5.0’ ** package ‘geomander’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprwoXzw/R.INSTALL25a92d1d2b1e96/geomander/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c adjlist2matrix.cpp -o adjlist2matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c code.c -o code.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c countconnections.cpp -o countconnections.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c geary.cpp -o geary.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c getisord.cpp -o getisord.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c moran.cpp -o moran.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o geomander.so RcppExports.o adjlist2matrix.o code.o contiguity.o countconnections.o geary.o getisord.o moran.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprwoXzw/R.INSTALL25a92d1d2b1e96/geomander/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-geomander/00new/geomander/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geomander) * installing *source* package ‘BalancedSampling’ ... ** this is package ‘BalancedSampling’ version ‘2.1.1’ ** package ‘BalancedSampling’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkW2O8O/R.INSTALL25a40d5c13a7c5/BalancedSampling/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CpsClass.cc -o CpsClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CubeClass.cc -o CubeClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CubeStratifiedClass.cc -o CubeStratifiedClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c CubeVectorInNullSpace.cc -o CubeVectorInNullSpace.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c IndexListClass.cc -o IndexListClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c KDNodeClass.cc -o KDNodeClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c KDStoreClass.cc -o KDStoreClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c KDTreeClass.cc -o KDTreeClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c LpmClass.cc -o LpmClass.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ReducedRowEchelonForm.cc -o ReducedRowEchelonForm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cps.cc -o cps.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cube.cc -o cube.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cube_stratified.cc -o cube_stratified.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c getPips.cc -o getPips.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c hlpm2.cc -o hlpm2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lpm.cc -o lpm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sb-localbalance.cc -o sb-localbalance.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sb-voronoi.cc -o sb-voronoi.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c vsb.cc -o vsb.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BalancedSampling.so CpsClass.o CubeClass.o CubeStratifiedClass.o CubeVectorInNullSpace.o IndexListClass.o KDNodeClass.o KDStoreClass.o KDTreeClass.o LpmClass.o RcppExports.o ReducedRowEchelonForm.o cps.o cube.o cube_stratified.o getPips.o hlpm2.o lpm.o sb-localbalance.o sb-voronoi.o vsb.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkW2O8O/R.INSTALL25a40d5c13a7c5/BalancedSampling/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BalancedSampling/00new/BalancedSampling/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BalancedSampling) * installing *source* package ‘redistmetrics’ ... ** this is package ‘redistmetrics’ version ‘1.0.9’ ** package ‘redistmetrics’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmph3t06i/R.INSTALL25a3f556654226/redistmetrics/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c compactness.cpp -o compactness.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c competitiveness.cpp -o competitiveness.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c distances.cpp -o distances.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c kirchhoff.cpp -o kirchhoff.o In file included from kirchhoff.cpp:2: ../inst/include/kirchhoff_inline.h: In function ‘double log_st_distr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: ../inst/include/kirchhoff_inline.h:25:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:25:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h:34:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:34:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h:43:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:43:62: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~^~~~~~~~~ ../inst/include/kirchhoff_inline.h: In function ‘double log_st_contr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: ../inst/include/kirchhoff_inline.h:70:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 70 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:85:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 85 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ ../inst/include/kirchhoff_inline.h:93:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 93 | if (districts(nbor, idx) != district || pos.at(nbor) == cty) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ kirchhoff.cpp: In function ‘Rcpp::NumericVector n_removed(const Graph&, const arma::umat&, int)’: kirchhoff.cpp:43:36: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbors[j], n) != dist) removed += 1.0; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c partisan.cpp -o partisan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c reindex.cpp -o reindex.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c segregation.cpp -o segregation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c splits.cpp -o splits.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c tally.cpp -o tally.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o redistmetrics.so RcppExports.o compactness.o competitiveness.o contiguity.o distances.o kirchhoff.o partisan.o reindex.o segregation.o splits.o tally.o varinfo.o -latomic -lpthread -latomic -lpthread -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmph3t06i/R.INSTALL25a3f556654226/redistmetrics/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redistmetrics/00new/redistmetrics/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redistmetrics) begin installing package ‘redist’ * installing *source* package ‘hipread’ ... ** this is package ‘hipread’ version ‘0.2.5’ ** package ‘hipread’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpn8WuXg/R.INSTALL25a40091694fa/hipread/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from datasource.h:8, from hipread_types.h:4, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c column.cpp -o column.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from column.h:6, from column.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c datasource.cpp -o datasource.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from datasource.cpp:7: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gzstream.cpp -o gzstream.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c iconv.cpp -o iconv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_chunked.cpp -o read_chunked.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from column.h:6, from read_chunked.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_freqs.cpp -o read_freqs.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from column.h:6, from read_freqs.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_full.cpp -o read_full.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from column.h:6, from read_full.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c read_yield.cpp -o read_yield.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/sp_counted_base.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/detail/shared_count.hpp:22, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/smart_ptr/shared_ptr.hpp:17, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/shared_ptr.hpp:17, from boost.h:12, from column.h:6, from read_yield.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include/boost/detail/atomic_count.hpp:10:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rtinfo.cpp -o rtinfo.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o hipread.so RcppExports.o column.o datasource.o gzstream.o iconv.o read_chunked.o read_freqs.o read_full.o read_yield.o rtinfo.o varinfo.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpn8WuXg/R.INSTALL25a40091694fa/hipread/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hipread/00new/hipread/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hipread) * installing *source* package ‘arcgisutils’ ... ** this is package ‘arcgisutils’ version ‘0.4.0’ ** package ‘arcgisutils’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.90.0 (840b83a10 2025-07-30) (built from a source tarball) Using rustc 1.90.0 (1159e78c4 2025-09-14) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/.cargo/config.toml; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling strsim v0.11.1 Compiling fnv v1.0.7 Compiling ident_case v1.0.1 Compiling serde v1.0.219 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling quote v1.0.40 Compiling paste v1.0.15 Compiling syn v2.0.100 Compiling serde_json v1.0.140 Compiling extendr-api v0.8.0 Compiling memchr v2.7.4 Compiling ryu v1.0.20 Compiling itoa v1.0.15 Compiling once_cell v1.21.3 Compiling darling_core v0.20.11 Compiling serde_derive v1.0.219 Compiling darling_macro v0.20.11 Compiling darling v0.20.11 Compiling derive_builder_core v0.20.2 Compiling derive_builder_macro v0.20.2 Compiling serde_with_macros v3.12.0 Compiling derive_builder v0.20.2 Compiling extendr-macros v0.8.0 Compiling serde_with v3.12.0 Compiling serde_esri v0.3.1 (https://github.com/josiahparry/serde_esri#28502b3a) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Compiling arcgisutils v0.1.0 (/home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/rust) note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 46.59s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o arcgisutils.so entrypoint.o -L./rust/target/release -larcgisutils -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/.cargo /home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfjNnTp/R.INSTALL25a3f958942922/arcgisutils/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arcgisutils/00new/arcgisutils/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arcgisutils) begin installing package ‘arcpbf’ * installing *source* package ‘arcpbf’ ... ** this is package ‘arcpbf’ version ‘0.2.0’ ** package ‘arcpbf’ successfully unpacked and MD5 sums checked ** using staged installation Using cargo 1.90.0 (840b83a10 2025-07-30) (built from a source tarball) Using rustc 1.90.0 (1159e78c4 2025-09-14) (built from a source tarball) Building for CRAN. Writing `src/Makevars`. `tools/config.R` has finished. ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c entrypoint.c -o entrypoint.o # Check if NOT_CRAN is false and unzip vendor.tar.xz if so if [ "" != "true" ]; then \ if [ -f ./rust/vendor.tar.xz ]; then \ tar xf rust/vendor.tar.xz && \ mkdir -p /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/.cargo && \ cp rust/vendor-config.toml /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/.cargo/config.toml; \ fi; \ fi export CARGO_HOME=/home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/.cargo && \ export PATH="/usr/local/bin:/usr/bin:/bin:/home/hornik/.cargo/bin" && \ RUSTFLAGS=" --print=native-static-libs" cargo build -j 2 --offline --lib --release --manifest-path=./rust/Cargo.toml --target-dir ./rust/target warning: profiles for the non root package will be ignored, specify profiles at the workspace root: package: /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/rust/arcpbf/Cargo.toml workspace: /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/rust/Cargo.toml Compiling proc-macro2 v1.0.94 Compiling unicode-ident v1.0.18 Compiling anyhow v1.0.97 Compiling build-print v0.1.1 Compiling extendr-ffi v0.8.0 Compiling quote v1.0.40 Compiling syn v2.0.100 Compiling either v1.15.0 Compiling autocfg v1.4.0 Compiling num-traits v0.2.19 Compiling itertools v0.12.1 Compiling paste v1.0.15 Compiling bytes v1.10.1 Compiling extendr-api v0.8.0 Compiling prost-derive v0.12.6 Compiling extendr-macros v0.8.0 Compiling prost v0.12.6 Compiling iana-time-zone v0.1.63 Compiling once_cell v1.21.3 Compiling esripbf v0.1.0 (/home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/rust/esripbf) Compiling chrono v0.4.40 Compiling arcpbf v0.1.0 (/home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/rust/arcpbf) note: Link against the following native artifacts when linking against this static library. The order and any duplication can be significant on some platforms. note: native-static-libs: -lR -lgcc_s -lutil -lrt -lpthread -lm -ldl -lc Finished `release` profile [optimized] target(s) in 21.89s # Always clean up CARGOTMP rm -Rf /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/.cargo; gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o arcpbf.so entrypoint.o -L./rust/target/release -larcpbf -L/home/hornik/tmp/R/lib -lR rm -Rf /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/.cargo /home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src/vendor ./rust/target make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFMpoXw/R.INSTALL25adf77ac8da0b/arcpbf/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-arcpbf/00new/arcpbf/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arcpbf) begin installing package ‘arcgislayers’ * installing *source* package ‘arcgislayers’ ... ** this is package ‘arcgislayers’ version ‘0.5.2’ ** package ‘arcgislayers’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arcgislayers) * installing *source* package ‘redist’ ... ** this is package ‘redist’ version ‘4.3.1’ ** package ‘redist’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8fNKNy/R.INSTALL25ad712b761065/redist/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c adj_reduce.cpp -o adj_reduce.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c check_contiguity.cpp -o check_contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c coarsen.cpp -o coarsen.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c coloring.cpp -o coloring.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c compact_vectorized.cpp -o compact_vectorized.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c constraint_calc_helper.cpp -o constraint_calc_helper.o constraint_calc_helper.cpp: In function ‘arma::uvec getIn(arma::ivec, arma::ivec)’: constraint_calc_helper.cpp:107:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 107 | for(i = 0; i < vec1.n_elem; i++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 109 | for(j = 0; j < vec2.n_elem; j++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp: In function ‘arma::uvec get_in_index(arma::vec, arma::vec)’: constraint_calc_helper.cpp:125:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 125 | for(i = 0; i < vec1.n_elem; i++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:127:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 127 | for(j = 0; j < vec2.n_elem; j++){ | ~~^~~~~~~~~~~~~ constraint_calc_helper.cpp:124:22: warning: variable ‘match’ set but not used [-Wunused-but-set-variable] 124 | int i; int j; bool match; arma::uvec store_in(vec1.n_elem); | ^~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c contiguity.cpp -o contiguity.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c cores.cpp -o cores.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c crsg.cpp -o crsg.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_helpers.cpp -o distance_helpers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c kirchhoff.cpp -o kirchhoff.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c make_swaps_helper.cpp -o make_swaps_helper.o make_swaps_helper.cpp: In function ‘Rcpp::NumericVector distParity(Rcpp::NumericMatrix, Rcpp::NumericVector)’: make_swaps_helper.cpp:412:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 412 | for(int k = 0; k < assignments.size(); k++){ | ~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c map_calc.cpp -o map_calc.o map_calc.cpp: In function ‘double log_boundary(const Graph&, const arma::subview_col&, int, int)’: map_calc.cpp:16:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 16 | if (districts(i) != distr_root) continue; // same side of boundary as root | ~~~~~~~~~~~~~^~~~~~~~~~~~~ map_calc.cpp:18:33: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 18 | if (districts(nbor) != distr_other) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ map_calc.cpp: In function ‘double eval_sq_entropy(const arma::subview_col&, const arma::uvec&, int, const arma::uvec&, int, int, int)’: map_calc.cpp:38:28: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 38 | if (current[k] != j) continue; map_calc.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 41 | if (districts[k] == distr) | ~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_inc(const arma::subview_col&, int, const arma::uvec&)’: map_calc.cpp:114:42: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 114 | if (districts[incumbents[i] - 1] == distr) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_polsby(const arma::subview_col&, int, const arma::ivec&, const arma::ivec&, const arma::vec&, const arma::vec&)’: map_calc.cpp:242:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 242 | for (int e = 0; e < idx.size(); e++) { | ~~^~~~~~~~~~~~ map_calc.cpp:246:41: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 246 | if (districts(from(idx(e))) != distr) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ map_calc.cpp: In function ‘double eval_fry_hold(const arma::subview_col&, int, const arma::uvec&, arma::mat, double)’: map_calc.cpp:264:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 264 | for (int i = 0; i < idxs.size() - 1; i++) { | ~~^~~~~~~~~~~~~~~~~ map_calc.cpp:265:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare] 265 | for (int k = i + 1; k < idxs.size(); k++) { | ~~^~~~~~~~~~~~~ map_calc.cpp: In function ‘double eval_grp_hinge(const arma::subview_col&, int, const arma::vec&, const arma::uvec&, const arma::uvec&)’: map_calc.cpp:71:43: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 71 | return std::sqrt(std::max(0.0, target - frac)); | ~~~~~~~^~~~~~ map_calc.cpp:60:12: note: ‘target’ was declared here 60 | double target; | ^~~~~~ map_calc.cpp: In function ‘double eval_grp_inv_hinge(const arma::subview_col&, int, const arma::vec&, const arma::uvec&, const arma::uvec&)’: map_calc.cpp:93:41: warning: ‘target’ may be used uninitialized [-Wmaybe-uninitialized] 93 | return std::sqrt(std::max(0.0, frac - target)); | ~~~~~^~~~~~~~ map_calc.cpp:82:12: note: ‘target’ was declared here 82 | double target; | ^~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c mcmc_gibbs.cpp -o mcmc_gibbs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c merge_split.cpp -o merge_split.o In file included from merge_split.h:14, from merge_split.cpp:9: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h: In function ‘double log_st_distr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:25:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:25:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 25 | if (districts(i, idx) == district && counties(i) == county) { | ~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:34:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:34:54: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 34 | if (districts(i, idx) != district || counties(i) != county) continue; | ~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:43:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:43:62: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 43 | if (districts(nbor, idx) != district || counties(nbor) != county) continue; | ~~~~~~~~~~~~~~~^~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h: In function ‘double log_st_contr(const Graph&, const arma::umat&, const arma::uvec&, int, int, int)’: /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:70:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 70 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:85:27: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 85 | if (districts(i, idx) != district) continue; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include/kirchhoff_inline.h:93:32: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 93 | if (districts(nbor, idx) != district || pos.at(nbor) == cty) continue; | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ merge_split.cpp: In function ‘double split_map_ms(const Graph&, Tree&, const arma::uvec&, Multigraph&, arma::subview_col, int, int, std::vector&, std::vector&, const arma::uvec&, double, double, double, int)’: merge_split.cpp:186:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 186 | if (districts(i) == distr_1 || districts(i) == distr_2) { | ~~~~~~~~~~~~~^~~~~~~~~~ merge_split.cpp:186:53: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 186 | if (districts(i) == distr_1 || districts(i) == distr_2) { | ~~~~~~~~~~~~~^~~~~~~~~~ merge_split.cpp: In function ‘bool cut_districts_ms(Tree&, int, int, arma::subview_col&, int, int, const arma::uvec&, double, double, double, double)’: merge_split.cpp:230:26: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 230 | if (districts(i) != distr_root || i == root) continue; | ~~~~~~~~~~~~~^~~~~~~~~~~~~ merge_split.cpp: In function ‘void adapt_ms_parameters(const Graph&, int, int&, double, double, const arma::uvec&, const arma::uvec&, Multigraph&, const arma::uvec&, double)’: merge_split.cpp:299:25: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 299 | if (plan(j) == distr_1 || plan(j) == distr_2) { | ~~~~~~~~^~~~~~~~~~ merge_split.cpp:299:47: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 299 | if (plan(j) == distr_1 || plan(j) == distr_2) { | ~~~~~~~~^~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c pareto.cpp -o pareto.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c pop_helpers.cpp -o pop_helpers.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c random.cpp -o random.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c renumber.cpp -o renumber.o In file included from renumber.cpp:4: hungarian.h: In member function ‘void HungarianAlgorithm::assignmentoptimal(int*, double*, double*, int, int)’: hungarian.h:169:21: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 169 | if (fabs(distMatrix[row + nOfRows*col]) < DBL_EPSILON) | ^~ hungarian.h:177:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 177 | for (row = 0; row&, int, const arma::uvec&, double, double, double, double)’: smc.cpp:528:30: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 528 | if (districts(i - 1) != distr_root || i - 1 == root) continue; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c smc_base.cpp -o smc_base.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c splits.cpp -o splits.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c sw_mh_alg.cpp -o sw_mh_alg.o sw_mh_alg.cpp: In function ‘Rcpp::List vector_to_list(arma::uvec)’: sw_mh_alg.cpp:26:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 26 | for(int i = 0; i < vecname.n_elem; i++) { | ~~^~~~~~~~~~~~~~~~ sw_mh_alg.cpp: In function ‘arma::uvec get_not_in(arma::uvec, arma::uvec)’: sw_mh_alg.cpp:35:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 35 | for(i = 0; i < vec1.n_elem; i++) { | ~~^~~~~~~~~~~~~ sw_mh_alg.cpp: In function ‘Rcpp::List swMH(Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector, int, Rcpp::List, double, double, Rcpp::NumericVector, Rcpp::NumericVector, int, double, std::string, int, int, int, int, int, int, int, bool)’: sw_mh_alg.cpp:365:37: warning: ‘start_anneal’ may be used uninitialized [-Wmaybe-uninitialized] 365 | if ((k >= start_anneal) & (k < start_cold)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sw_mh_alg.cpp:131:9: note: ‘start_anneal’ was declared here 131 | int start_anneal; | ^~~~~~~~~~~~ sw_mh_alg.cpp:365:37: warning: ‘start_cold’ may be used uninitialized [-Wmaybe-uninitialized] 365 | if ((k >= start_anneal) & (k < start_cold)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sw_mh_alg.cpp:132:9: note: ‘start_cold’ was declared here 132 | int start_cold; | ^~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c sw_mh_helper.cpp -o sw_mh_helper.o sw_mh_helper.cpp: In function ‘Rcpp::NumericVector init_pop(Rcpp::NumericVector, arma::vec)’: sw_mh_helper.cpp:42:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 42 | for(j = 0; j < cd_i_ind.n_elem; j++){ | ~~^~~~~~~~~~~~~~~~~ sw_mh_helper.cpp: In function ‘int count_valid(Rcpp::List, Rcpp::List, Rcpp::NumericVector)’: sw_mh_helper.cpp:309:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 309 | for(j = 0; j < find_cds.n_elem; j++){ | ~~^~~~~~~~~~~~~~~~~ sw_mh_helper.cpp: In function ‘Rcpp::List changeBeta(arma::vec, double, double, Rcpp::NumericVector, int)’: sw_mh_helper.cpp:793:70: warning: ‘wj’ may be used uninitialized [-Wmaybe-uninitialized] 793 | double mhprobGT = (double)exp(-1 * constraint * (propBeta - beta)) * wj / wi * qji / qij; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ sw_mh_helper.cpp:737:10: note: ‘wj’ was declared here 737 | double wj; | ^~ sw_mh_helper.cpp:793:61: warning: ‘propBeta’ may be used uninitialized [-Wmaybe-uninitialized] 793 | double mhprobGT = (double)exp(-1 * constraint * (propBeta - beta)) * wj / wi * qji / qij; | ~~~~~~~~~~^~~~~~~ sw_mh_helper.cpp:738:10: note: ‘propBeta’ was declared here 738 | double propBeta; | ^~~~~~~~ sw_mh_helper.cpp: In function ‘Rcpp::List make_swaps(Rcpp::List, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::List, Rcpp::CharacterVector, double, double, double, int, double, double, const Graph&)’: sw_mh_helper.cpp:599:16: warning: ‘curr_cd’ may be used uninitialized [-Wmaybe-uninitialized] 599 | cd_pair(0) = curr_cd; | ~~~~~~~~~~~^~~~~~~~~ sw_mh_helper.cpp:473:9: note: ‘curr_cd’ was declared here 473 | int curr_cd; | ^~~~~~~ sw_mh_helper.cpp:600:16: warning: ‘prop_cd’ may be used uninitialized [-Wmaybe-uninitialized] 600 | cd_pair(1) = prop_cd; | ~~~~~~~~~~~^~~~~~~~~ sw_mh_helper.cpp:474:9: note: ‘prop_cd’ was declared here 474 | int prop_cd; | ^~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree_op.cpp -o tree_op.o tree_op.cpp: In function ‘int find_subroot(const Tree&, const std::vector&)’: tree_op.cpp:186:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for (int k = 0; k < nbors->size(); k++) { | ~~^~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c varinfo.cpp -o varinfo.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppThread/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/tmp/CRAN_recheck/Library/redistmetrics/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -g0 -fpic -g -O2 -Wall -pedantic -mtune=native -c wilson.cpp -o wilson.o wilson.cpp: In function ‘int walk_until(const Graph&, int, std::vector >&, int, const std::vector&, const std::vector&, const arma::uvec&)’: wilson.cpp:208:52: warning: comparison of integer expressions of different signedness: ‘const long long unsigned int’ and ‘int’ [-Wsign-compare] 208 | if (ignore[proposal] || counties[proposal] != county) { g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o redist.so RcppExports.o adj_reduce.o check_contiguity.o coarsen.o coloring.o compact_vectorized.o constraint_calc_helper.o contiguity.o cores.o crsg.o distance_helpers.o kirchhoff.o make_swaps_helper.o map_calc.o mcmc_gibbs.o merge_split.o pareto.o pop_helpers.o random.o renumber.o rsg.o scorer_helpers.o shatter_search.o smc.o smc_base.o splits.o sw_mh_alg.o sw_mh_helper.o tree_op.o varinfo.o wilson.o -latomic -lpthread -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8fNKNy/R.INSTALL25ad712b761065/redist/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-redist/00new/redist/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redist) checking rmapshaper_0.6.0.tar.gz ... checking arealDB_0.9.4.tar.gz ... checking canadamaps_0.1.tar.gz ... checking cshapes_2.0.tar.gz ... checking chilemapas_0.3.0.tar.gz ... checking dots_0.0.3.tar.gz ... checking MazamaSpatialUtils_0.8.7.tar.gz ... checking micromapST_3.1.1.tar.gz ... checking alarmdata_0.2.1.tar.gz ... checking sugarbag_0.1.6.tar.gz ... checking csdata_2024.4.26.tar.gz ... checking dawaR_0.3.1.tar.gz ... checking FedData_4.3.0.tar.gz ... checking ipumsr_0.9.0.tar.gz ... checking redist_4.3.1.tar.gz ... checking leafdown_1.2.0.tar.gz ... checking StratifiedSampling_0.4.2.tar.gz ... checking tmaptools_3.3.tar.gz ... Depends: Package: rmapshaper Imports: methods, geojsonsf (>= 2.0.5), jsonify (>= 1.2.3), readr (>= 2.1.0), sf (>= 1.0.0), sp (>= 1.4-0), V8 (>= 6.0.0) Timings: user system elapsed rmapshaper 64.519 6.421 59.062 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 3 14 Check results summary: rmapshaper ... OK rdepends_alarmdata ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_arealDB ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_canadamaps ... OK rdepends_chilemapas ... OK rdepends_csdata ... OK rdepends_cshapes ... OK rdepends_dawaR ... OK rdepends_dots ... OK rdepends_FedData ... OK rdepends_ipumsr ... OK rdepends_leafdown ... OK rdepends_MazamaSpatialUtils ... OK rdepends_micromapST ... OK rdepends_redist ... OK rdepends_StratifiedSampling ... OK rdepends_sugarbag ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_tmaptools ... OK Check results changes: Package: sugarbag Check: CRAN incoming feasibility Old result: NOTE