R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(rliger)
Package `rliger` has been updated massively since version 1.99.0, including the object structure which is not compatible with old versions.

We recommand you backup your old analysis before overwriting any existing result.

`readLiger()` is provided for reading an RDS file storing an old object and it converts the object to the up-to-date structure.

Package "RcppPlanc" is required for performing integrative factorizations but is not detected. It is currently not on CRAN, so please install it with `devtools::install_github('welch-lab/RcppPlanc')`
> 
> test_check("rliger")
Working ctrl H5 file path:  D:\temp\Rtmpwht0xc\ctrltest_8ea4731e481e.h5 
Working stim H5 file path:  D:\temp\Rtmpwht0xc\stimtest_8ea4b0543c8.h5 




Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Working ctrl H5 file path:  D:\temp\Rtmpwht0xc\ctrltest_8ea41882670f.h5 
Working stim H5 file path:  D:\temp\Rtmpwht0xc\stimtest_8ea4595f4db8.h5 


Working ctrl H5 file path:  D:\temp\Rtmpwht0xc\ctrltest_8ea4108a5b9d.h5 
Working stim H5 file path:  D:\temp\Rtmpwht0xc\stimtest_8ea4737b6ed1.h5 




Working ctrl H5 file path:  D:\temp\Rtmpwht0xc\ctrltest_8ea4798439d2.h5 
Working stim H5 file path:  D:\temp\Rtmpwht0xc\stimtest_8ea476325468.h5 






Working ctrl H5 file path:  D:\temp\Rtmpwht0xc\ctrltest_8ea473b86881.h5 
Working stim H5 file path:  D:\temp\Rtmpwht0xc\stimtest_8ea47b8b5471.h5 










[ FAIL 0 | WARN 0 | SKIP 20 | PASS 1070 ]

══ Skipped tests (20) ══════════════════════════════════════════════════════════
• DoubletFinder cannot be loaded (1): 'test_preprocessing.R:112:5'
• RcppPlanc cannot be loaded (19): 'test_downstream.R:69:5',
  'test_downstream.R:148:5', 'test_downstream.R:184:5',
  'test_downstream.R:239:5', 'test_downstream.R:317:5',
  'test_factorization.R:58:5', 'test_factorization.R:94:5',
  'test_factorization.R:121:5', 'test_factorization.R:154:5',
  'test_factorization.R:197:5', 'test_factorization.R:233:5',
  'test_factorization.R:247:5', 'test_factorization.R:265:5',
  'test_factorization.R:309:5', 'test_object.R:129:5', 'test_object.R:231:5',
  'test_object.R:335:5', 'test_subset.R:62:5', 'test_subset.R:77:5'

[ FAIL 0 | WARN 0 | SKIP 20 | PASS 1070 ]
> 
> proc.time()
   user  system elapsed 
  48.57    2.14  246.37