R version 4.4.0 alpha (2024-04-03 r86327 ucrt)
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Platform: x86_64-w64-mingw32/x64

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> library(testthat)
> library(rliger)
Package `rliger` has been updated massively since version 1.99.0, including the object structure which is not compatible with old versions.

We recommand you backup your old analysis before overwriting any existing result.

`readLiger()` is provided for reading an RDS file storing an old object and it converts the object to the up-to-date structure.

Package "RcppPlanc" is required for performing integrative factorizations but is not detected. It is currently not on CRAN, so please install it with `devtools::install_github('welch-lab/RcppPlanc')`
> 
> test_check("rliger")
Working ctrl H5 file path:  D:\temp\RtmpO8cvkI\ctrltest_5a30743e2724.h5 
Working stim H5 file path:  D:\temp\RtmpO8cvkI\stimtest_5a30449459ca.h5 




Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Working ctrl H5 file path:  D:\temp\RtmpO8cvkI\ctrltest_5a304d5f4294.h5 
Working stim H5 file path:  D:\temp\RtmpO8cvkI\stimtest_5a3058455d30.h5 


Working ctrl H5 file path:  D:\temp\RtmpO8cvkI\ctrltest_5a3045be65bf.h5 
Working stim H5 file path:  D:\temp\RtmpO8cvkI\stimtest_5a307eb31be0.h5 




Working ctrl H5 file path:  D:\temp\RtmpO8cvkI\ctrltest_5a30f0440c7.h5 
Working stim H5 file path:  D:\temp\RtmpO8cvkI\stimtest_5a304c710df.h5 






Working ctrl H5 file path:  D:\temp\RtmpO8cvkI\ctrltest_5a3015ad6a31.h5 
Working stim H5 file path:  D:\temp\RtmpO8cvkI\stimtest_5a302ea2643.h5 










[ FAIL 0 | WARN 0 | SKIP 17 | PASS 1042 ]

══ Skipped tests (17) ══════════════════════════════════════════════════════════
• DoubletFinder cannot be loaded (1): 'test_preprocessing.R:112:5'
• RcppPlanc cannot be loaded (16): 'test_downstream.R:69:5',
  'test_downstream.R:119:5', 'test_downstream.R:143:5',
  'test_downstream.R:190:5', 'test_downstream.R:267:5',
  'test_factorization.R:58:5', 'test_factorization.R:94:5',
  'test_factorization.R:121:5', 'test_factorization.R:154:5',
  'test_factorization.R:197:5', 'test_factorization.R:238:5',
  'test_object.R:128:5', 'test_object.R:230:5', 'test_object.R:334:5',
  'test_subset.R:62:5', 'test_subset.R:77:5'

[ FAIL 0 | WARN 0 | SKIP 17 | PASS 1042 ]
> 
> proc.time()
   user  system elapsed 
  50.98    2.07  244.20