R Under development (unstable) (2024-03-19 r86153 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(rliger)
Package `rliger` has been updated massively since version 1.99.0, including the object structure which is not compatible with old versions.

We recommand you backup your old analysis before overwriting any existing result.

`readLiger()` is provided for reading an RDS file storing an old object and it converts the object to the up-to-date structure.

Package "RcppPlanc" is required for performing integrative factorizations but is not detected. It is currently not on CRAN, so please install it with `devtools::install_github('welch-lab/RcppPlanc')`
> 
> test_check("rliger")
Working ctrl H5 file path:  C:\Users\CRAN\Documents\ctrltest.h5 
Working stim H5 file path:  C:\Users\CRAN\Documents\stimtest.h5 




Performing log-normalization
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Working ctrl H5 file path:  C:\Users\CRAN\Documents\ctrltest.h5 
Working stim H5 file path:  C:\Users\CRAN\Documents\stimtest.h5 


Working ctrl H5 file path:  C:\Users\CRAN\Documents\ctrltest.h5 
Working stim H5 file path:  C:\Users\CRAN\Documents\stimtest.h5 




Working ctrl H5 file path:  C:\Users\CRAN\Documents\ctrltest.h5 
Working stim H5 file path:  C:\Users\CRAN\Documents\stimtest.h5 






Working ctrl H5 file path:  C:\Users\CRAN\Documents\ctrltest.h5 
Working stim H5 file path:  C:\Users\CRAN\Documents\stimtest.h5 










[ FAIL 0 | WARN 0 | SKIP 16 | PASS 1042 ]

══ Skipped tests (16) ══════════════════════════════════════════════════════════
• has_RcppPlanc is not TRUE (16): 'test_downstream.R:66:5',
  'test_downstream.R:114:5', 'test_downstream.R:138:5',
  'test_downstream.R:184:5', 'test_downstream.R:257:5',
  'test_factorization.R:55:5', 'test_factorization.R:91:5',
  'test_factorization.R:112:5', 'test_factorization.R:145:5',
  'test_factorization.R:188:5', 'test_factorization.R:229:5',
  'test_object.R:125:5', 'test_object.R:227:5', 'test_object.R:331:5',
  'test_subset.R:55:5', 'test_subset.R:70:5'

[ FAIL 0 | WARN 0 | SKIP 16 | PASS 1042 ]
> 
> proc.time()
   user  system elapsed 
  73.90    3.25  347.61