R Under development (unstable) (2023-11-07 r85491 ucrt) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(rliger) Loading required package: Matrix > > test_check("rliger") EPHB2 | | | 0% | |= | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |======== | 11% | |======== | 12% | |========= | 13% | |========== | 14% | |========== | 15% | |=========== | 16% | |============ | 17% | |============= | 18% | |============= | 19% | |============== | 20% | |=============== | 21% | |======================================================================| 100% Finished in 23.70565 secs, 21 iterations. Max iterations set: 100. Final objective delta: 9.8172e-05. Best results with seed 1. | | | 0% | |======== | 11% | |================ | 22% | |======================= | 33% | |======================================= | 56% | |====================================================== | 78% | |======================================================================| 100%ACAT2 ANAPC4 AP5B1 ARHGAP21 CCL8 CMSS1 CNOT3 CSRNP1 EI24 FADS1 IKBKE MINK1 NPIPB5 PIBF1 PTGIR PTGS2 RGS12 RSPH3 SENP2 TAX1BP3 TOR2A VAPB ZADH2 NOTE: This function will discard the raw data previously stored in the liger object and replace the raw.data slot with the imputed data. Imputing ALL the datasets except the reference dataset Reference dataset: seqwell Query datasets: tenx Normalizing data... NOTE: This function will discard the raw data previously stored in the liger object and replace the raw.data slot with the imputed data. Imputing ALL the datasets except the reference dataset Reference dataset: seqwell Query datasets: tenx Normalizing data... EPHB2 [ FAIL 0 | WARN 14 | SKIP 0 | PASS 126 ] [ FAIL 0 | WARN 14 | SKIP 0 | PASS 126 ] > > proc.time() user system elapsed 36.85 2.34 39.18