context("confint() limits") test_that("confint has the same results as tidy", { conf_low_tidy <- function(approach) { set.seed(123) broom::tidy(riskratio( formula = death ~ stage + receptor, data = breastcancer, approach = approach)) |> dplyr::filter(term == "stageStage II") |> dplyr::pull("conf.low") |> purrr::pluck(1) } conf_low_confint <- function(approach) { set.seed(123) confint(riskratio( formula = death ~ stage + receptor, data = breastcancer, approach = approach)) |> tibble::as_tibble(rownames = "term") |> dplyr::filter(term == "stageStage II") |> dplyr::select(`2.5 %`) |> purrr::pluck(1) } expect_equal( object = conf_low_tidy(approach = "auto"), expected = conf_low_confint(approach = "auto")) expect_equal( object = conf_low_tidy(approach = "robpoisson"), expected = conf_low_confint(approach = "robpoisson")) expect_equal( object = conf_low_tidy(approach = "duplicate"), expected = conf_low_confint(approach = "duplicate")) expect_equal( object = conf_low_tidy(approach = "glm_startp"), expected = conf_low_confint(approach = "glm_startp")) expect_equal( object = conf_low_tidy(approach = "glm_startd"), expected = conf_low_confint(approach = "glm_startd")) expect_equal( object = conf_low_tidy(approach = "margstd_boot"), expected = conf_low_confint(approach = "margstd_boot")) expect_equal( object = conf_low_tidy(approach = "margstd_delta"), expected = conf_low_confint(approach = "margstd_delta")) expect_equal( object = conf_low_tidy(approach = "logistic"), expected = conf_low_confint(approach = "logistic")) expect_equal( object = conf_low_tidy(approach = "legacy"), expected = conf_low_confint(approach = "legacy")) if(requireNamespace("logbin", quietly = TRUE)) { expect_equal( object = conf_low_tidy(approach = "glm_cem"), expected = conf_low_confint(approach = "glm_cem")) expect_equal( object = conf_low_tidy(approach = "glm_cem_startp"), expected = conf_low_confint(approach = "glm_cem_startp")) } })