* using log directory ‘/home/hornik/tmp/CRAN_special_valgrind/riskRegression.Rcheck’ * using R Under development (unstable) (2025-05-18 r88216) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-19) 14.2.0 GNU Fortran (Debian 14.2.0-19) 14.2.0 * running under: Debian GNU/Linux 13 (trixie) * using session charset: UTF-8 * using option ‘--use-valgrind’ * checking for file ‘riskRegression/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘riskRegression’ version ‘2025.05.20’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘riskRegression’ can be installed ... [170s/171s] OK * used C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [5s/5s] OK * checking whether the package can be loaded with stated dependencies ... [4s/4s] OK * checking whether the package can be unloaded cleanly ... [4s/4s] OK * checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK * checking whether the namespace can be unloaded cleanly ... [4s/4s] OK * checking loading without being on the library search path ... [4s/4s] OK * checking whether startup messages can be suppressed ... [4s/4s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [72s/72s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [15m/15m] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ate 68.429 0.228 68.926 riskRegression 42.295 0.605 42.686 influenceTest 36.734 0.056 36.788 predictRisk 36.036 0.119 36.155 IPA 33.316 0.425 33.486 wglm 30.530 0.091 30.611 synthesize 30.310 0.096 30.395 plotBrier 26.421 1.787 27.311 autoplot.Score 24.901 0.988 25.195 plotROC 24.713 0.192 24.831 riskLevelPlot 23.638 0.036 23.739 autoplot.predictCSC 23.446 0.044 23.480 confint.ate 23.000 0.036 23.011 autoplot.ate 22.790 0.048 22.812 predict.CauseSpecificCox 22.792 0.039 22.817 plotRisk 21.309 0.164 21.382 plotCalibration 19.160 0.124 19.230 boxplot.Score 18.241 0.055 18.282 plotPredictRisk 17.996 0.016 18.043 GLMnet 17.613 0.056 17.692 plotAUC 16.484 0.984 16.798 predictCox 16.384 0.024 16.413 CSC 13.866 0.076 14.061 sampleData 13.915 0.024 13.932 Ctree 13.814 0.036 13.887 Score 13.664 0.180 13.778 simPBC 12.812 0.008 12.812 saveCoxConfidential 11.309 0.020 11.353 confint.predictCSC 9.754 0.016 9.786 subjectWeights 9.552 0.032 9.680 autoplot.predictCox 8.460 0.012 8.470 simActiveSurveillance 7.184 0.007 7.194 confint.predictCox 7.155 0.008 7.159 simMelanoma 6.914 0.032 6.941 iidCox 6.353 0.004 6.355 selectCox 5.410 0.008 5.416 predict.FGR 5.150 0.004 5.153 simsynth 5.074 0.000 5.072 FGR 5.058 0.008 5.065 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [17m/16m] OK Running ‘testthat.R’ [17m/16m] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [13s/13s] OK * checking PDF version of manual ... [5s/5s] OK * checking HTML version of manual ... [3s/3s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK