* using log directory ‘/srv/hornik/tmp/CRAN_pretest/rice.Rcheck’
* using R Under development (unstable) (2025-04-08 r88126)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (1+b1)
    Debian flang-new version 19.1.7 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘rice/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rice’ version ‘1.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/8s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rice’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [7s/7s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from Rd file 'push.gamma.Rd':
push.gamma
  Code: function(y, er, mean, shape, add = TRUE, n = 1e+06, prob =
                 0.95, cc = 1, postbomb = FALSE, deltaR = 0, deltaSTD =
                 0, thiscurve = NULL, cc.dir = NULL, is.F = FALSE,
                 normal = TRUE, t.a = 3, t.b = 4, BCAD = FALSE, cal.lim
                 = c(), calib.col = rgb(0, 0, 0, 0.25), pushed.col =
                 rgb(0, 0, 1, 0.4), heights = 0.3, inset = TRUE,
                 inset.col = "darkgreen", inset.loc = c(0.6, 0.97, 0.6,
                 0.97), inset.mar = c(3, 0.5, 0.5, 0.5), inset.mgp =
                 c(2, 1, 0))
  Docs: function(y, er, mean, shape, add = TRUE, n = 1e+06, prob =
                 0.95, cc = 1, postbomb = FALSE, deltaR = 0, deltaSTD =
                 0, thiscurve = NULL, cc.dir = NULL, is.F = FALSE,
                 normal = TRUE, t.a = 3, t.b = 4, BCAD = FALSE, cal.lim
                 = c(), calib.col = rgb(0, 0, 0, 0.25), pushed.col =
                 rgb(0, 0, 1, 0.4), inset = TRUE, inset.col =
                 "darkgreen", inset.loc = c(0.6, 0.97, 0.6, 0.97),
                 inset.mar = c(3, 0.5, 0.5, 0.5), inset.mgp = c(2, 1,
                 0))
  Argument names in code not in docs:
    heights
  Mismatches in argument names (first 3):
    Position: 22 Code: heights Docs: inset
    Position: 23 Code: inset Docs: inset.col
    Position: 24 Code: inset.col Docs: inset.loc

Codoc mismatches from Rd file 'push.normal.Rd':
push.normal
  Code: function(y, er, mean, sdev, add = TRUE, n = 1e+06, prob = 0.95,
                 cc = 1, postbomb = FALSE, deltaR = 0, deltaSTD = 0,
                 thiscurve = NULL, cc.dir = NULL, normal = TRUE, t.a =
                 3, t.b = 4, BCAD = FALSE, cal.lim = c(), calib.col =
                 rgb(0, 0, 0, 0.25), pushed.col = rgb(0, 0, 1, 0.4),
                 heights = 0.3, inset = TRUE, inset.col = "darkgreen",
                 inset.loc = c(0.6, 0.97, 0.6, 0.97), inset.mar = c(3,
                 0.5, 0.5, 0.5), inset.mgp = c(2, 1, 0))
  Docs: function(y, er, mean, sdev, add = TRUE, n = 1e+06, prob = 0.95,
                 cc = 1, postbomb = FALSE, deltaR = 0, deltaSTD = 0,
                 thiscurve = NULL, cc.dir = NULL, normal = TRUE, t.a =
                 3, t.b = 4, BCAD = FALSE, cal.lim = c(), calib.col =
                 rgb(0, 0, 0, 0.25), pushed.col = rgb(0, 0, 1, 0.4),
                 inset = TRUE, inset.col = "darkgreen", inset.loc =
                 c(0.6, 0.97, 0.6, 0.97), inset.mar = c(3, 0.5, 0.5,
                 0.5), inset.mgp = c(2, 1, 0))
  Argument names in code not in docs:
    heights
  Mismatches in argument names (first 3):
    Position: 21 Code: heights Docs: inset
    Position: 22 Code: inset Docs: inset.col
    Position: 23 Code: inset.col Docs: inset.loc

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/20s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [24s/24s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING