* installing *source* package ‘ribiosUtils’ ...
** this is package ‘ribiosUtils’ version ‘1.7.6’
** using staged installation
** libs
using C compiler: ‘Debian clang version 21.1.8 (1+b1)’
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c affyfileHandler.c -o affyfileHandler.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c algutil.c -o algutil.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c alphatrans.c -o alphatrans.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c arg.c -o arg.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c array.c -o array.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c avlTree.c -o avlTree.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c binalgparser.c -o binalgparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c bitmap.c -o bitmap.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c biurl.c -o biurl.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c blastdb.c -o blastdb.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c blastparser.c -o blastparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c chemutil.c -o chemutil.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c combi.c -o combi.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c eval.c -o eval.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c forest.c -o forest.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c format.c -o format.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c fuzzparser.c -o fuzzparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c geometry.c -o geometry.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c graphalgo.c -o graphalgo.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c graphics.c -o graphics.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c hash.c -o hash.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c hierclus.c -o hierclus.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c hlrmisc.c -o hlrmisc.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c hmmparser.c -o hmmparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c html.c -o html.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c htmlform.c -o htmlform.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c linestream.c -o linestream.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c lnk.c -o lnk.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c log.c -o log.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c matvec.c -o matvec.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c msfparser.c -o msfparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c pagedesign.c -o pagedesign.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c patternmatch.c -o patternmatch.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c pearsonfastaparser.c -o pearsonfastaparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c phraplightparser.c -o phraplightparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c plabla.c -o plabla.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c primer3parser.c -o primer3parser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c properties.c -o properties.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c pwdecode.c -o pwdecode.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c r_endec.c -o r_endec.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c r_mmatch.c -o r_mmatch.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c r_trim.c -o r_trim.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c rdbu.c -o rdbu.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c recipes.c -o recipes.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c seqautil.c -o seqautil.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c sequenceAlignment.c -o sequenceAlignment.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c sequtil.c -o sequtil.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c statistics.c -o statistics.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c stringlist.c -o stringlist.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c wiseparser.c -o wiseparser.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c wwwsession.c -o wwwsession.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c xmlbuilder.c -o xmlbuilder.o
clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O3 -Wall -pedantic -c xmlparser.c -o xmlparser.o
clang-21 -std=gnu23 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o ribiosUtils.so affyfileHandler.o algutil.o alphatrans.o arg.o array.o avlTree.o binalgparser.o bitmap.o biurl.o blastdb.o blastparser.o chemutil.o combi.o eval.o forest.o format.o fuzzparser.o geometry.o graphalgo.o graphics.o hash.o hierclus.o hlrmisc.o hmmparser.o html.o htmlform.o init.o linestream.o lnk.o log.o matvec.o msfparser.o pagedesign.o patternmatch.o pearsonfastaparser.o phraplightparser.o plabla.o primer3parser.o properties.o pwdecode.o r_endec.o r_mmatch.o r_trim.o rdbu.o recipes.o seqautil.o sequenceAlignment.o sequtil.o statistics.o stringlist.o wiseparser.o wwwsession.o xmlbuilder.o xmlparser.o -L/home/hornik/tmp/R-d-clang-21/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/ribiosUtils.Rcheck/00LOCK-ribiosUtils/00new/ribiosUtils/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ribiosUtils)