* using log directory ‘/srv/hornik/tmp/CRAN_pretest/ribiosPlot.Rcheck’
* using R Under development (unstable) (2026-02-07 r89380)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (1+b1)
    Debian flang version 21.1.8 (1+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-02-08 16:26:15 UTC
* checking for file ‘ribiosPlot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ribiosPlot’ version ‘1.3.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Jitao David Zhang <jitao_david.zhang@roche.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  Ribios (3:27)

Suggests or Enhances not in mainstream repositories:
  ribiosArg, Vennerable

Found the following (possibly) invalid URLs:
  URL: https://twitter.com/hadleywickham/status/504368538874703872 (moved to https://x.com/hadleywickham/status/504368538874703872)
    From: inst/doc/cascadePlot.html
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: ‘ribiosArg’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ribiosPlot’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Unavailable namespace imported from by a ':::' call: ‘Vennerable’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] NOTE
Found the following possibly unsafe calls:
File ‘ribiosPlot/R/plotVenn.R’:
  unlockBinding(funcName, env)
  assignInNamespace(funcName, newFunc, ns = package, envir = env)
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) colorpanel.Rd:28: Escaped LaTeX specials: \#
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] OK
  Running ‘test-colors.R’ [1s/1s]
  Running ‘test-heatmap.R’ [1s/1s]
  Running ‘test_openFileDevice.R’ [1s/1s]
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘test.png’
* checking for detritus in the temp directory ... OK
* DONE
Status: 5 NOTEs