R Under development (unstable) (2026-02-11 r89406 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(ribiosArg) Loading required package: ribiosUtils Attaching package: 'ribiosArg' The following objects are masked from 'package:ribiosUtils': isDebugging, isIntDebugging, scriptInit, setDebug, unsetDebug > > rexe <- file.path(dirname(dirname(commandArgs()[1])), + "R") > rscript <- system.file("Rscript/test-argParse.Rscript", package="ribiosArg") > comm1 <- sprintf("%s -infile blablabla -outfile bla2 -a 34 48 -c 45 -b -e a", rscript) > comm2 <- sprintf("%s -f %s -infile blablabla -outfile bla2 -a 34 48 -c 45 -b -e b", rexe, rscript) > system(comm1) [1] 127 Warning message: In system(comm1) : 'CreateProcess' failed to run 'D:\RCompile\CRANincoming\R-devel\lib\ribiosArg\Rscript\test-argParse.Rscript -infile blablabla -outfile bla2 -a 34 48 -c 45 -b -e a' > system(comm2) WARNING: unknown option '-infile' WARNING: unknown option '-outfile' WARNING: unknown option '-a' WARNING: unknown option '-c' WARNING: unknown option '-b' [1] 5 > > ns.rscript <- system.file("Rscript/test-argParse-notstrict.Rscript", package="ribiosArg") > comm1 <- sprintf("%s -infile blablabla -outfile bla2 -a 34 48 -c 45 -b -e c", rscript) > comm2 <- sprintf("%s -f %s -infile blablabla -outfile bla2 -a 34 48 -c 45 -b f1 f2 f3 -e b", rexe, rscript) > system(comm1) [1] 127 Warning message: In system(comm1) : 'CreateProcess' failed to run 'D:\RCompile\CRANincoming\R-devel\lib\ribiosArg\Rscript\test-argParse.Rscript -infile blablabla -outfile bla2 -a 34 48 -c 45 -b -e c' > system(comm2) WARNING: unknown option '-infile' WARNING: unknown option '-outfile' WARNING: unknown option '-a' WARNING: unknown option '-c' WARNING: unknown option '-b' [1] 5 > > proc.time() user system elapsed 0.21 0.10 0.51