* installing *source* package ‘rgeoda’ ... ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (3)’ using C++17 clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/libgeoda.cpp -o libgeoda/libgeoda.o In file included from libgeoda/libgeoda.cpp:14: In file included from ./libgeoda/./shape/centroid.h:14: In file included from ./libgeoda/./shape/ttmath/ttmath.h:58: In file included from ./libgeoda/./shape/ttmath/ttmathbig.h:46: In file included from ./libgeoda/./shape/ttmath/ttmathint.h:48: ./libgeoda/./shape/ttmath/ttmathuint.h:1350:10: warning: variable 'c' set but not used [-Wunused-but-set-variable] uint i, c, xc, yc; ^ libgeoda/libgeoda.cpp:204:9: warning: variable 'shppointtotal' set but not used [-Wunused-but-set-variable] int shppointtotal = 0, shppoint = 0; ^ libgeoda/libgeoda.cpp:269:9: warning: variable 'shppointtotal' set but not used [-Wunused-but-set-variable] int shppointtotal = 0, shppoint = 0, shpringtotal = 0, shpring = 0; ^ libgeoda/libgeoda.cpp:269:42: warning: variable 'shpringtotal' set but not used [-Wunused-but-set-variable] int shppointtotal = 0, shppoint = 0, shpringtotal = 0, shpring = 0; ^ libgeoda/libgeoda.cpp:269:60: warning: variable 'shpring' set but not used [-Wunused-but-set-variable] int shppointtotal = 0, shppoint = 0, shpringtotal = 0, shpring = 0; ^ 5 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/gda_sa.cpp -o libgeoda/gda_sa.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/gda_data.cpp -o libgeoda/gda_data.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/gda_weights.cpp -o libgeoda/gda_weights.o libgeoda/gda_weights.cpp:204:9: warning: variable 'line_cnt' set but not used [-Wunused-but-set-variable] int line_cnt = 0; ^ libgeoda/gda_weights.cpp:448:6: warning: variable 'line_num' set but not used [-Wunused-but-set-variable] int line_num = 1; ^ libgeoda/gda_weights.cpp:502:9: warning: variable 'swmType' set but not used [-Wunused-but-set-variable] int swmType = 0; // old ^ 3 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/gda_clustering.cpp -o libgeoda/gda_clustering.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/GenGeomAlgs.cpp -o libgeoda/GenGeomAlgs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/GenUtils.cpp -o libgeoda/GenUtils.o libgeoda/GenUtils.cpp:122:12: warning: variable 'SP' set but not used [-Wunused-but-set-variable] double SP=0, SE=0; ^ libgeoda/GenUtils.cpp:122:18: warning: variable 'SE' set but not used [-Wunused-but-set-variable] double SP=0, SE=0; ^ libgeoda/GenUtils.cpp:2047:9: warning: variable 'max_gvf_ind' set but not used [-Wunused-but-set-variable] int max_gvf_ind = 0; ^ 3 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/SpatialIndAlgs.cpp -o libgeoda/SpatialIndAlgs.o In file included from libgeoda/SpatialIndAlgs.cpp:13: In file included from ./libgeoda/SpatialIndAlgs.h:9: In file included from ./libgeoda/SpatialIndTypes.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:34: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/rtree.hpp:90: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:18: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:355:18: note: in instantiation of template class 'boost::scoped_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' requested here iterator_ptr m_ptr; ^ libgeoda/SpatialIndAlgs.cpp:107:11: note: in instantiation of template class 'boost::geometry::index::detail::rtree::iterators::query_iterator>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>' requested here rtree.qbegin(bgi::intersects(rtree.bounds())); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/c++/13/backward/auto_ptr.h:291:7: note: 'auto_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' has been explicitly marked deprecated here } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:106:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:98:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) ^ libgeoda/SpatialIndAlgs.cpp:120:7: warning: variable 'qcnt' set but not used [-Wunused-but-set-variable] int qcnt=0; ^ libgeoda/SpatialIndAlgs.cpp:104:6: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ In file included from libgeoda/SpatialIndAlgs.cpp:13: In file included from ./libgeoda/SpatialIndAlgs.h:9: In file included from ./libgeoda/SpatialIndTypes.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:34: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/rtree.hpp:90: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:18: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:355:18: note: in instantiation of template class 'boost::scoped_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' requested here iterator_ptr m_ptr; ^ libgeoda/SpatialIndAlgs.cpp:134:41: note: in instantiation of template class 'boost::geometry::index::detail::rtree::iterators::query_iterator, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>' requested here rtree_pt_2d_t::const_query_iterator it; ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/c++/13/backward/auto_ptr.h:291:7: note: 'auto_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' has been explicitly marked deprecated here } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:106:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:98:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) ^ libgeoda/SpatialIndAlgs.cpp:132:6: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ libgeoda/SpatialIndAlgs.cpp:340:9: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ In file included from libgeoda/SpatialIndAlgs.cpp:13: In file included from ./libgeoda/SpatialIndAlgs.h:9: In file included from ./libgeoda/SpatialIndTypes.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:34: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/rtree.hpp:90: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:18: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:355:18: note: in instantiation of template class 'boost::scoped_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' requested here iterator_ptr m_ptr; ^ libgeoda/SpatialIndAlgs.cpp:410:11: note: in instantiation of template class 'boost::geometry::index::detail::rtree::iterators::query_iterator, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>' requested here rtree.qbegin(bgi::intersects(rtree.bounds())); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/c++/13/backward/auto_ptr.h:291:7: note: 'auto_ptr, unsigned int>, boost::geometry::index::detail::rtree::allocators, unsigned int>>, std::pair, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' has been explicitly marked deprecated here } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:106:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:98:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) ^ libgeoda/SpatialIndAlgs.cpp:728:6: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ libgeoda/SpatialIndAlgs.cpp:833:6: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ In file included from libgeoda/SpatialIndAlgs.cpp:13: In file included from ./libgeoda/SpatialIndAlgs.h:9: In file included from ./libgeoda/SpatialIndTypes.h:23: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/geometry.hpp:63: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/buffer.hpp:22: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/implementation.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffer_inserter.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/buffer/buffered_piece_collection.hpp:32: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/covered_by.hpp:24: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/covered_by/implementation.hpp:25: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/implementation.hpp:30: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/algorithms/detail/within/multi_point.hpp:34: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/rtree.hpp:90: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:18: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/geometry/index/detail/rtree/query_iterators.hpp:355:18: note: in instantiation of template class 'boost::scoped_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' requested here iterator_ptr m_ptr; ^ libgeoda/SpatialIndAlgs.cpp:1004:11: note: in instantiation of template class 'boost::geometry::index::detail::rtree::iterators::query_iterator>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>>, boost::geometry::index::detail::rtree::node_variant_static_tag>>' requested here rtree.qbegin(bgi::intersects(rtree.bounds())); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/c++/13/backward/auto_ptr.h:291:7: note: 'auto_ptr>, unsigned int>, boost::geometry::index::detail::rtree::allocators>, unsigned int>>, std::pair>, unsigned int>, boost::geometry::index::quadratic<16, 4>, boost::geometry::model::box>>, boost::geometry::index::detail::rtree::node_variant_static_tag>>>' has been explicitly marked deprecated here } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:106:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:98:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) ^ libgeoda/SpatialIndAlgs.cpp:1001:6: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt=0; ^ 11 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/pg/geoms.cpp -o libgeoda/pg/geoms.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/pg/utils.cpp -o libgeoda/pg/utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/shapelib/dbfopen.cpp -o libgeoda/shapelib/dbfopen.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/shapelib/safileio.cpp -o libgeoda/shapelib/safileio.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/shapelib/shpopen.cpp -o libgeoda/shapelib/shpopen.o libgeoda/shapelib/shpopen.cpp:988:21: warning: variable 'nCurrentRecordOffset' set but not used [-Wunused-but-set-variable] unsigned int nCurrentRecordOffset = 0; ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/PointsToContigWeights.cpp -o libgeoda/weights/PointsToContigWeights.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/PolysToContigWeights.cpp -o libgeoda/weights/PolysToContigWeights.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/GalWeight.cpp -o libgeoda/weights/GalWeight.o libgeoda/weights/GalWeight.cpp:120:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] std::sort(undef_obj_positions.begin(), ^ libgeoda/weights/GalWeight.cpp:116:5: note: previous statement is here if (undef_obj_positions.empty()) ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/GwtWeight.cpp -o libgeoda/weights/GwtWeight.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/GeodaWeight.cpp -o libgeoda/weights/GeodaWeight.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/weights/VoronoiUtils.cpp -o libgeoda/weights/VoronoiUtils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/BatchLISA.cpp -o libgeoda/sa/BatchLISA.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/BatchLocalMoran.cpp -o libgeoda/sa/BatchLocalMoran.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/LISA.cpp -o libgeoda/sa/LISA.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/MultiGeary.cpp -o libgeoda/sa/MultiGeary.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/MultiJoinCount.cpp -o libgeoda/sa/MultiJoinCount.o libgeoda/sa/MultiJoinCount.cpp:237:9: warning: variable 'validNeighbors' set but not used [-Wunused-but-set-variable] int validNeighbors = 0; ^ libgeoda/sa/MultiJoinCount.cpp:255:9: warning: variable 'validNeighbors' set but not used [-Wunused-but-set-variable] int validNeighbors = 0; ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/UniG.cpp -o libgeoda/sa/UniG.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/UniGeary.cpp -o libgeoda/sa/UniGeary.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/UniGstar.cpp -o libgeoda/sa/UniGstar.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/UniJoinCount.cpp -o libgeoda/sa/UniJoinCount.o libgeoda/sa/UniJoinCount.cpp:237:9: warning: variable 'validNeighbors' set but not used [-Wunused-but-set-variable] int validNeighbors = 0; ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/UniLocalMoran.cpp -o libgeoda/sa/UniLocalMoran.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/sa/BiLocalMoran.cpp -o libgeoda/sa/BiLocalMoran.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/fastcluster.cpp -o libgeoda/clustering/fastcluster.o In file included from libgeoda/clustering/fastcluster.cpp:8: libgeoda/clustering/fastcluster.h:912:35: warning: bitwise negation of a boolean expression; did you mean logical negation? [-Wbool-operation] NTF += (Xb(i,k) & ~Xb(j,k)) ; ^~~~~~~~ ! 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/redcap.cpp -o libgeoda/clustering/redcap.o libgeoda/clustering/redcap.cpp:392:9: warning: variable 'evaluated' set but not used [-Wunused-but-set-variable] int evaluated = 0; ^ libgeoda/clustering/redcap.cpp:529:25: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt1=0, cnt2=0, cnt=0; ^ In file included from libgeoda/clustering/redcap.cpp:31: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/graph/prim_minimum_spanning_tree.hpp:15: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/graph/dijkstra_shortest_paths.hpp:26: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr.hpp:17: In file included from /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/scoped_ptr.hpp:13: /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here property_ptr m_property; ^ libgeoda/clustering/redcap.cpp:698:11: note: in instantiation of template class 'boost::adjacency_list>' requested here Graph g(rows); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/c++/13/backward/auto_ptr.h:291:7: note: 'auto_ptr' has been explicitly marked deprecated here } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr"); ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:106:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) ^ /usr/bin/../lib/gcc/x86_64-linux-gnu/13/../../../../include/x86_64-linux-gnu/c++/13/bits/c++config.h:98:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) ^ libgeoda/clustering/redcap.cpp:723:12: warning: variable 'sum_length' set but not used [-Wunused-but-set-variable] double sum_length=0; ^ libgeoda/clustering/redcap.cpp:990:9: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt = 0; ^ libgeoda/clustering/redcap.cpp:1272:9: warning: variable 'cnt' set but not used [-Wunused-but-set-variable] int cnt = 0; ^ 6 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/redcap_wrapper.cpp -o libgeoda/clustering/redcap_wrapper.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/azp.cpp -o libgeoda/clustering/azp.o libgeoda/clustering/azp.cpp:1448:9: warning: variable 'totalMoves' set but not used [-Wunused-but-set-variable] int totalMoves = 0; ^ libgeoda/clustering/azp.cpp:1449:9: warning: variable 'acceptedMoves' set but not used [-Wunused-but-set-variable] int acceptedMoves = 0; ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/maxp_wrapper.cpp -o libgeoda/clustering/maxp_wrapper.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/azp_wrapper.cpp -o libgeoda/clustering/azp_wrapper.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/schc_wrapper.cpp -o libgeoda/clustering/schc_wrapper.o In file included from libgeoda/clustering/schc_wrapper.cpp:10: libgeoda/clustering/fastcluster.h:912:35: warning: bitwise negation of a boolean expression; did you mean logical negation? [-Wbool-operation] NTF += (Xb(i,k) & ~Xb(j,k)) ; ^~~~~~~~ ! 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/cluster.cpp -o libgeoda/clustering/cluster.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/joincount_ratio.cpp -o libgeoda/clustering/joincount_ratio.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/make_spatial.cpp -o libgeoda/clustering/make_spatial.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/clustering/spatial_validation.cpp -o libgeoda/clustering/spatial_validation.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/ANN.cpp -o libgeoda/knn/ANN.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/perf.cpp -o libgeoda/knn/perf.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_util.cpp -o libgeoda/knn/kd_util.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_tree.cpp -o libgeoda/knn/kd_tree.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_split.cpp -o libgeoda/knn/kd_split.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_search.cpp -o libgeoda/knn/kd_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_pr_search.cpp -o libgeoda/knn/kd_pr_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_fix_rad_search.cpp -o libgeoda/knn/kd_fix_rad_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/kd_dump.cpp -o libgeoda/knn/kd_dump.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/brute.cpp -o libgeoda/knn/brute.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/bd_tree.cpp -o libgeoda/knn/bd_tree.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/bd_search.cpp -o libgeoda/knn/bd_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/bd_pr_search.cpp -o libgeoda/knn/bd_pr_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c libgeoda/knn/bd_fix_rad_search.cpp -o libgeoda/knn/bd_fix_rad_search.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_rgeoda.cpp -o rcpp_rgeoda.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_weights.cpp -o rcpp_weights.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_utils.cpp -o rcpp_utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_lisa.cpp -o rcpp_lisa.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rcpp_clustering.cpp -o rcpp_clustering.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I./libgeoda -D__USE_PTHREAD__ -D__RGEODA__ -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/BH/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o rgeoda.so ./libgeoda/libgeoda.o ./libgeoda/gda_sa.o ./libgeoda/gda_data.o ./libgeoda/gda_weights.o ./libgeoda/gda_clustering.o ./libgeoda/GenGeomAlgs.o ./libgeoda/GenUtils.o ./libgeoda/SpatialIndAlgs.o ./libgeoda/pg/geoms.o ./libgeoda/pg/utils.o ./libgeoda/shapelib/dbfopen.o ./libgeoda/shapelib/safileio.o ./libgeoda/shapelib/shpopen.o ./libgeoda/weights/PointsToContigWeights.o ./libgeoda/weights/PolysToContigWeights.o ./libgeoda/weights/GalWeight.o ./libgeoda/weights/GwtWeight.o ./libgeoda/weights/GeodaWeight.o ./libgeoda/weights/VoronoiUtils.o ./libgeoda/sa/BatchLISA.o ./libgeoda/sa/BatchLocalMoran.o ./libgeoda/sa/LISA.o ./libgeoda/sa/MultiGeary.o ./libgeoda/sa/MultiJoinCount.o ./libgeoda/sa/UniG.o ./libgeoda/sa/UniGeary.o ./libgeoda/sa/UniGstar.o ./libgeoda/sa/UniJoinCount.o ./libgeoda/sa/UniLocalMoran.o ./libgeoda/sa/BiLocalMoran.o ./libgeoda/clustering/fastcluster.o ./libgeoda/clustering/redcap.o ./libgeoda/clustering/redcap_wrapper.o ./libgeoda/clustering/azp.o ./libgeoda/clustering/maxp_wrapper.o ./libgeoda/clustering/azp_wrapper.o ./libgeoda/clustering/schc_wrapper.o ./libgeoda/clustering/cluster.o ./libgeoda/clustering/joincount_ratio.o ./libgeoda/clustering/make_spatial.o ./libgeoda/clustering/spatial_validation.o ./libgeoda/knn/ANN.o ./libgeoda/knn/perf.o ./libgeoda/knn/kd_util.o ./libgeoda/knn/kd_tree.o ./libgeoda/knn/kd_split.o ./libgeoda/knn/kd_search.o ./libgeoda/knn/kd_pr_search.o ./libgeoda/knn/kd_fix_rad_search.o ./libgeoda/knn/kd_dump.o ./libgeoda/knn/brute.o ./libgeoda/knn/bd_tree.o ./libgeoda/knn/bd_search.o ./libgeoda/knn/bd_pr_search.o ./libgeoda/knn/bd_fix_rad_search.o rcpp_rgeoda.o rcpp_weights.o rcpp_utils.o rcpp_lisa.o rcpp_clustering.o RcppExports.o -pthread -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /srv/hornik/tmp/CRAN/rgeoda.Rcheck/00LOCK-rgeoda/00new/rgeoda/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rgeoda)