context("occ_count") test_that("occ_count", { vcr::use_cassette("occ_count", { aa <- occ_count() bb <- occ_count(taxonKey=212, year="2000,2011") cc <- occ_count(year=2012) dd <- occ_count(occurrenceStatus = "ABSENT") ee <- occ_count(basisOfRecord="MATERIAL_SAMPLE",organismQuantity=5) ff <- occ_count(verbatimScientificName="Calopteryx splendens;Calopteryx virgo") }, preserve_exact_body_bytes = TRUE) # returns the correct class expect_is(aa, "numeric") expect_is(bb, "numeric") expect_is(cc, "numeric") expect_is(dd, "numeric") expect_is(ee, "numeric") expect_is(ff, "numeric") # any with filter should be less than aa expect_lt(bb,aa) expect_lt(cc,aa) expect_lt(dd,aa) expect_lt(ee,aa) expect_lt(ff,aa) # returns the correct dimensions expect_equal(length(aa), 1) expect_equal(length(bb), 1) expect_equal(length(cc), 1) expect_equal(length(dd), 1) expect_equal(length(ee), 1) expect_equal(length(ff), 1) }) test_that("occ_count facets work", { vcr::use_cassette("occ_count_facet", { aa <- occ_count(facet="year",occurrenceStatus = NULL) bb <- occ_count(facet="year",taxonKey=212, year="2000,2003") cc <- occ_count(facet="country",facetLimit=2) dd <- occ_count(facet="occurrenceStatus",occurrenceStatus=NULL) ee <- occ_count(facet="basisOfRecord",basisOfRecord="MATERIAL_SAMPLE",organismQuantity=5) ff <- occ_count(facet="coordinateUncertaintyInMeters",verbatimScientificName="Calopteryx splendens;Calopteryx virgo") }, preserve_exact_body_bytes = TRUE) # returns the correct class expect_is(aa, "data.frame") expect_is(bb, "data.frame") expect_is(cc, "data.frame") expect_is(dd, "data.frame") expect_is(ee, "data.frame") expect_is(ff, "data.frame") # colnames are correct expect_equal(colnames(aa),c("year","count")) expect_equal(colnames(bb),c("year","count")) expect_equal(colnames(cc),c("country","count")) expect_equal(colnames(dd),c("occurrenceStatus","count")) expect_equal(colnames(ee),c("basisOfRecord","count")) expect_equal(colnames(ff),c("coordinateUncertaintyInMeters","count")) # returns reasonable amounts of rows expect_equal(nrow(aa), 10) expect_equal(nrow(bb), 4) expect_equal(nrow(cc), 2) expect_equal(nrow(dd), 2) expect_equal(nrow(ee), 1) expect_lte(nrow(ff), 10) # returns the correct dimensions expect_equal(ncol(aa), 2) expect_equal(ncol(bb), 2) expect_equal(ncol(cc), 2) expect_equal(ncol(dd), 2) expect_equal(ncol(ee), 2) expect_equal(ncol(ff), 2) }) test_that("occ_count fails well", { expect_warning( occ_count(limit=100), "limit not acceptable args for occ_count\\(\\) and will be ignored." ) expect_warning( occ_count(dog="bad_arg"), "dog not acceptable args for occ_count\\(\\) and will be ignored." ) expect_warning( occ_count(return="all"), "return not acceptable args for occ_count\\(\\) and will be ignored." ) expect_error( occ_count(basisOfRecord=c('OBSERVATION','PRESERVED_SPECIMEN'), year=2012), "Multiple values of the form c\\('a','b'\\) are not supported. Use 'a;b' instead." ) expect_error( occ_count(facet="dog"), "Bad facet arg." ) expect_error( occ_count(facet="search",taxonKey=212), "Bad facet arg." ) }) test_that("occ_count legacy params", { vcr::use_cassette("occ_count_legacy_params", { expect_warning(occ_count(georeferenced = TRUE), "arg 'georeferenced' is deprecated since rgbif 3.7.6, use 'hasCoordinate' and 'hasGeospatialIssue' instead." ) expect_warning(occ_count(date = "2010"), "arg 'date' is deprecated since rgbif 3.7.6" ) expect_warning(occ_count(type="count"), "arg 'type' is deprecated since rgbif 3.7.6, use 'occ_counts_\\*' functions instead." ) expect_warning(occ_count(from="2000",to="2001"), "args 'to' and 'from' are deprecated since rgbif 3.7.6, use 'year' instead." ) }, preserve_exact_body_bytes = TRUE) })