#context("GP: rpost_rcpp vs rpost") # We check that the values simulated using rpost() and rpost_rcpp() are # (close enough to) identical when they are called using the same data, # the same prior and starting from the same random number seed. # Set a tolerance for the comparison of the simulated values my_tol <- 1e-5 # Set a threshold. u <- stats::quantile(gom, probs = 0.65) gp_test <- function(seed = 47, prior, n = 5, rotate = TRUE, trans = "none", use_phi_map = FALSE, data = gom, nrep = 2, ...){ if (prior == "user") { prior_rfn <- set_prior(prior = "flat", model = "gp", min_xi = -1) ptr_gp_flat <- create_prior_xptr("gp_flat") prior_cfn <- set_prior(prior = ptr_gp_flat, model = "gp", min_xi = -1) } else { prior_rfn <- set_prior(prior = prior, model = "gp", ...) prior_cfn <- set_prior(prior = prior, model = "gp", ...) } set.seed(seed) res1 <- rpost(n = n, model = "gp", prior = prior_rfn, thresh = u, data = data, rotate = rotate, trans = trans, use_phi_map = use_phi_map, nrep = nrep) set.seed(seed) res2 <- rpost_rcpp(n = n, model = "gp", prior = prior_cfn, thresh = u, data = data, rotate = rotate, trans = trans, use_phi_map = use_phi_map, nrep = nrep) return(list(sim1 = as.numeric(res1$sim_vals), sim2 = as.numeric(res2$sim_vals), data_rep1 = as.numeric(res1$data_rep), data_rep2 = as.numeric(res2$data_rep))) } test_function <- function(x, test_string) { testthat::test_that(test_string, { testthat::expect_equal(x$sim1, x$sim2, tolerance = my_tol) testthat::expect_equal(x$data_rep1, x$data_rep2, tolerance = my_tol) }) } # Slow, belt-and-braces #rotate_vals <- c(FALSE, TRUE) #trans_vals <- c("none", "BC") #use_phi_map_vals <- c(FALSE, TRUE) # Faster, sufficient rotate_vals <- TRUE trans_vals <- "BC" use_phi_map_vals <- TRUE for (rotate in rotate_vals) { for (trans in trans_vals) { for (use_phi_map in use_phi_map_vals) { test_string <- paste("rotate =", rotate, "trans =", trans, "use_phi_map =", use_phi_map) x <- gp_test(prior = "flat", min_xi = -1, rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "flatflat", min_xi = -1, rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "norm", mean = c(0,0), cov = diag(100,2), rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "mdi", rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "jeffreys", rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "beta", rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) x <- gp_test(prior = "user", rotate = rotate, trans = trans, use_phi_map = use_phi_map) test_function(x, test_string) } } }