context("pandas") test_that("Simple Pandas data frames can be roundtripped", { skip_if_no_pandas() pd <- import("pandas") before <- iris after <- py_to_r(r_to_py(before)) mapply(function(lhs, rhs) { expect_equal(lhs, rhs) }, before, after) }) test_that("Ordered factors are preserved", { skip_if_no_pandas() pd <- import("pandas") set.seed(123) before <- data.frame(x = ordered(letters, levels = sample(letters))) after <- py_to_r(r_to_py(before)) expect_equal(before, after, check.attributes = FALSE) }) test_that("Generic methods for pandas objects produce correct results", { skip_if_no_pandas() df <- data.frame(x = c(1, 3), y = c(4, 4), z = c(5, 5)) pdf <- r_to_py(df) expect_equal(length(pdf), length(df)) expect_equal(length(pdf$x), length(df$x)) expect_equal(dim(pdf), dim(df)) expect_equal(dim(pdf$x), dim(df$x)) expect_equal(dim(summary(pdf)), c(8, 3)) expect_equal(length(summary(pdf$x)), 8) }) test_that("Timestamped arrays in Pandas DataFrames can be roundtripped", { skip_if_no_pandas() # TODO: this test fails on Windows because the int32 array gets # converted to an R numeric vector rather than an integer vector skip_on_os("windows") pd <- import("pandas", convert = FALSE) np <- import("numpy", convert = FALSE) data <- list( 'A' = 1., 'B' = pd$Timestamp('20130102'), 'C' = pd$Series(1:4, dtype = 'float32'), 'D' = np$array(rep(3L, 4), dtype = 'int32'), 'E' = pd$Categorical(c("test", "train", "test", "train")), 'F' = 'foo' ) before <- pd$DataFrame(data) converted <- py_to_r(before) after <- r_to_py(converted) expect_equal(py_to_r(before$to_csv()), py_to_r(after$to_csv())) }) test_that("data.frames with length-one factor columns can be converted", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) np <- import("numpy", convert = FALSE) before <- data.frame(x = "hello") converted <- r_to_py(before) after <- py_to_r(converted) expect_equal(before, after, check.attributes = FALSE) }) test_that("py_to_r preserves a Series index as names", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) np <- import("numpy", convert = FALSE) index <- c("a", "b", "c", "d", "e") values <- rnorm(5) s <- pd$Series(values, index = as.list(index)) s$name <- "hi" r <- py_to_r(s) expect_equal(as.numeric(r), values) expect_identical(names(r), index) }) test_that("complex names are handled", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) d <- dict(col1 = list(1,2)) d[tuple("col1", "col2")] <- list(4, 5) p <- pd$DataFrame(data = d) r <- py_to_r(p) expect_equal(names(r), c("col1", "(col1, col2)")) }) test_that("single-row data.frames with rownames can be converted", { skip_if_no_pandas() before <- data.frame(A = 1, row.names = "ID01") after <- py_to_r(r_to_py(before)) expect_equal(c(before), c(after)) }) test_that("Time zones are respected if available", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) before <- pd$DataFrame(list('TZ' = pd$Series( c( pd$Timestamp('20130102003020', tz = 'US/Pacific'), pd$Timestamp('20130102003020', tz = 'CET'), pd$Timestamp('20130102003020', tz = 'UTC'), pd$Timestamp('20130102003020', tz = 'Hongkong') ) ))) converted <- py_to_r(before) after <- r_to_py(converted) # check if both are the same in *local* timezone expect_equal(py_to_r(before), py_to_r(after)) }) test_that("NaT is converted to NA", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) np <- import("numpy") before <- pd$DataFrame(pd$Series( c( pd$Timestamp(NULL), pd$Timestamp(np$nan) ) )) converted <- py_to_r(before) after <- r_to_py(converted) expect_equal(py_to_r(before), py_to_r(after)) }) test_that("pandas NAs are converted to R NAs", { skip_if_no_pandas() code <- " import pandas as pd df = pd.DataFrame({'a': [1, 2, 3], 'b': [10, 20, pd.NA]}) " locals <- py_run_string(code, local = TRUE, convert = TRUE) df <- locals$df expect_true(is.na(df$b[[3]])) pd <- import("pandas", convert = FALSE) pdNA <- py_to_r(py_get_attr(pd, "NA")) expect_true(is.na(pdNA)) }) test_that("categorical NAs are handled", { skip_if_no_pandas() df <- data.frame(x = factor("a", NA)) pdf <- r_to_py(df) rdf <- py_to_r(pdf) attr(rdf, "pandas.index") <- NULL expect_equal(df, rdf) }) test_that("ordered categoricals are handled correctly, #1234", { skip_if_no_pandas() p_df <- py_run_string( 'import pandas as pd # Create Dataframe with Unordered & Ordered Factors df = pd.DataFrame({"FCT": pd.Categorical(["No", "Yes"]), "ORD": pd.Categorical(["No", "Yes"], ordered=True)}) ', local = TRUE)$df r_df <- data.frame("FCT" = factor(c("No", "Yes")), "ORD" = factor(c("No", "Yes"), ordered = TRUE)) attr(p_df, "pandas.index") <- NULL expect_identical(p_df, r_df) }) test_that("can cast from pandas nullable types", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) data <- list( list(name = "Int8", type = pd$Int8Dtype(), data = list(NULL, 1L, 2L)), list(name = "Int16", type = pd$Int16Dtype(), data = list(NULL, 1L, 2L)), list(name = "Int32", type = pd$Int32Dtype(), data = list(NULL, 1L, 2L)), list(name = "Int64", type = pd$Int64Dtype(), data = list(NULL, 1L, 2L)), list(name = "UInt8", type = pd$UInt8Dtype(), data = list(NULL, 1L, 2L)), list(name = "UInt16", type = pd$UInt16Dtype(), data = list(NULL, 1L, 2L)), list(name = "UInt32", type = pd$UInt32Dtype(), data = list(NULL, 1L, 2L)), list(name = "UInt64", type = pd$UInt64Dtype(), data = list(NULL, 1L, 2L)), list(name = "boolean", type = pd$BooleanDtype(), data = list(NULL, TRUE, FALSE)), list(name = "string", type = pd$StringDtype(), data = list(NULL, "a", "b")) ) # Float32 was added sometime after v1.1.5 if (reticulate::py_has_attr(pd, "Float32Dtype")) { data <- append( data, list( list(name = "Float32", type = pd$Float32Dtype(), data = list(NULL, 0.5, 0.3)), list(name = "Float64", type = pd$Float64Dtype(), data = list(NULL, 0.5, 0.3)) ) ) } for (el in data) { p_df <- pd$DataFrame(list("x" = pd$Series(el$data, dtype = el$type))) expect_equal(py_to_r(p_df$x$dtype$name), el$name) r_df <- py_to_r(p_df) expect_equal( r_df$x, unlist(lapply(el$data, function(x) if (is.null(x)) NA else x)) ) } }) test_that("NA in string columns don't prevent simplification", { skip_if_no_pandas() pd <- import("pandas", convert = FALSE) np <- import("numpy", convert = FALSE) x <- pd$Series(list("a", pd$`NA`, NULL, np$nan)) expect_equal(py_to_r(x$dtype$name), "object") r <- py_to_r(x) expect_equal(typeof(r), "character") expect_equal(as.logical(is.na(r)), c(FALSE, TRUE, TRUE, TRUE)) }) test_that("NA's are preserved in pandas columns", { skip_if_no_pandas() pd <- import("pandas") if (numeric_version(pd$`__version__`) < "1.5") { skip("Nullable data types require pandas version >= 1.5 to work fully.") } df <- data.frame( int = c(NA, 1:10), num = c(NA, rnorm(10)), bool = c(NA, rep(c(TRUE, FALSE), 5)), string = c(NA, letters[1:10]) ) withr::with_options(c(reticulate.pandas_use_nullable_dtypes = TRUE), { p_df <- r_to_py(df) }) r_df <- py_to_r(p_df) expect_identical(r_df$num, df$num) expect_identical(r_df$int, df$int) expect_identical(r_df$bool, df$bool) expect_identical(r_df$string, df$string) }) test_that("Round strip for string columns with NA's work correctly", { skip_if_no_pandas() df <- data.frame(string = c(NA, letters[1:10])) p <- r_to_py(df) expect_true(py_to_r(p$string$isna()[0])) r <- py_to_r(p) expect_true(is.na(r$string[1])) })