* using log directory 'd:/RCompile/CRANincoming/R-devel/reptiledbr.Rcheck'
* using R Under development (unstable) (2025-06-19 r88329 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'reptiledbr/DESCRIPTION' ... OK
* this is package 'reptiledbr' version '0.0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Paul Efren Santos Andrade <paulefrens@gmail.com>'

New submission

Suggests or Enhances not in mainstream repositories:
  reptiledb.data
* checking package namespace information ... OK
* checking package dependencies ... INFO
Package suggested but not available for checking: 'reptiledb.data'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'reptiledbr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'reptiledbr-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: list_subspecies_reptiledbr
> ### Title: List Subspecies from ReptileDB
> ### Aliases: list_subspecies_reptiledbr
> 
> ### ** Examples
> 
> 
> subspecies_names <- c("Lachesis muta",
+  "Anilius scytale",
+  "Anolis bahorucoensis")
> 
> search_reptiledbr(subspecies_names, use_fuzzy = FALSE) |>
+   list_subspecies_reptiledbr()
Warning in value[[3L]](cond) :
  Error or no results in exact search: there is no package called 'reptiledb.data'
Warning in search_reptiledbr(subspecies_names, use_fuzzy = FALSE) :
  No exact matches were found for the specified species.
Error in `dplyr::select()`:
! Can't select columns that don't exist.
✖ Column `species_match` doesn't exist.
Backtrace:
     ▆
  1. ├─reptiledbr::list_subspecies_reptiledbr(...)
  2. │ ├─dplyr::distinct(...)
  3. │ ├─dplyr::select(...)
  4. │ └─dplyr:::select.data.frame(dplyr::filter(df, message == "Species has subspecies"), species_match)
  5. │   └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call)
  6. │     └─tidyselect:::eval_select_impl(...)
  7. │       ├─tidyselect:::with_subscript_errors(...)
  8. │       │ └─base::withCallingHandlers(...)
  9. │       └─tidyselect:::vars_select_eval(...)
 10. │         └─tidyselect:::walk_data_tree(expr, data_mask, context_mask)
 11. │           └─tidyselect:::eval_c(expr, data_mask, context_mask)
 12. │             └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init)
 13. │               └─tidyselect:::walk_data_tree(new, data_mask, context_mask)
 14. │                 └─tidyselect:::as_indices_sel_impl(...)
 15. │                   └─tidyselect:::as_indices_impl(...)
 16. │                     └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg)
 17. │                       └─vctrs::vec_as_location(...)
 18. └─vctrs (local) `<fn>`()
 19.   └─vctrs:::stop_subscript_oob(...)
 20.     └─vctrs:::stop_subscript(...)
 21.       └─rlang::abort(...)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'format_all.Rmd' using rmarkdown
--- finished re-building 'format_all.Rmd'

--- re-building 'introduction.Rmd' using rmarkdown
--- finished re-building 'introduction.Rmd'

--- re-building 'local_search.Rmd' using rmarkdown

Quitting from local_search.Rmd:45-63 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'reptiledb.data'
---
Backtrace:
    ▆
 1. ├─reptiledbr::reptiledbr_exact(species_names)
 2. │ ├─dplyr::distinct(...)
 3. │ ├─dplyr::filter(...)
 4. │ └─dplyr::select(reptiledb.data::reptiledb_012025, order:species_name_year)
 5. └─base::loadNamespace(x)
 6.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 7.     └─base (local) withOneRestart(expr, restarts[[1L]])
 8.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'local_search.Rmd' failed with diagnostics:
there is no package called 'reptiledb.data'
--- failed re-building 'local_search.Rmd'

SUMMARY: processing the following file failed:
  'local_search.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 1 NOTE