context("PDF2 Tests") base_path <- "c:/packages/reporter/tests/testthat" data_dir <- base_path base_path <- tempdir() data_dir <- "." cnt <- paste0("Lorem ipsum dolor sit amet, consectetur adipiscing elit, ", "sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. ", "Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris ", "nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in ", "reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla ", "pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa ", "qui officia deserunt mollit anim id est laborum.") fnt <- "Arial" fsz <- 10 dev <- FALSE # Basic Tests 1 - 10 ------------------------------------------------------ test_that("pdf2-0a: Fixed report is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test0a.pdf") rpt <- create_report(fp, output_type = "PDF", font = "fixed") %>% titles("Table 0.0", "Baseline Characteristics") %>% add_content(create_table(mtcars[1:10, ])) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-0b: Fixed report with font_size is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test0b.pdf") rpt <- create_report(fp, output_type = "PDF", font = "fixed", font_size = 12) %>% titles("Table 0.0", "Baseline Characteristics") %>% add_content(create_table(mtcars[1:10, ])) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-0c: Fixed report with font_size options is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test0c.pdf") rpt <- create_report(fp, output_type = "PDF", font = "fixed") %>% options_fixed(font_size = 12) %>% titles("Table 0.0", "Baseline Characteristics") %>% add_content(create_table(mtcars[1:10, ])) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-0d: Fixed report with conflicting font size is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test0d.pdf") rpt <- create_report(fp, output_type = "PDF", font = "fixed", font_size = 8) %>% options_fixed(font_size = 12) %>% titles("Table 0.0", "Baseline Characteristics") %>% add_content(create_table(mtcars[1:10, ])) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-1a: Simple report with titles on report is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test1a.pdf") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 12) %>% set_margins(top = 1, left = 1, right = 1, bottom = 1) %>% page_header(c("Left1", "Another left"), c("Right1", "Right2", "Another right"), blank_row = "below") %>% titles("Table 0.0", "Baseline Characteristics", align = "center", blank_row = "below", bold = TRUE) %>% add_content(create_text(cnt, width = 6, align = "left"), align = "center") %>% footnotes("My footnote1", "My footnote2", valign = "top", blank_row = "none", width = "page", align = "left") %>% page_footer(c("Left1", "Left2"), "Center", "Right") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-1b: Report with title header is correct.", { fp <- file.path(base_path, "pdf2/test1b.pdf") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 12) %>% set_margins(top = 1, left = 1, right = 1, bottom = 1) %>% title_header("Table 0.0", "Baseline Characteristics", right = "right") %>% add_content(create_text(cnt, width = 6)) %>% page_footer(c("Left1", "Left2"), "Center", c("Right1", "Right2", "Right3")) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-1c: Report with titles on content is correct.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test1c.pdf") txt <- create_text(cnt, width = 6) %>% titles("Table 0.0", "Baseline Characteristics", align = "center") %>% footnotes("My footnote1", "My footnote2") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 12) %>% set_margins(top = 1, left = 1, right = 1, bottom = 1) %>% page_header(c("Left1", "Another left"), c("Right1", "Right2", "Another right"), blank_row = "below") %>% add_content(txt) %>% page_footer(c("Left1", "Left2"), "Center", "Right") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-1d: One page text spec with borders works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test1d.pdf") txt <- create_text(cnt, width = 6, borders = "outside", align = "right") %>% titles("Text 1.0", "My Nice Text", borders = "outside", font_size = 12) %>% footnotes("My footnote 1", "My footnote 2", borders = "outside") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 10) %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", "Right") %>% add_content(txt, align = "right") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-2: Two page text spec works as expected in 12pt font.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test2.pdf") cnttxt <- paste(rep(cnt, 12), collapse = "") txt <- create_text(cnttxt) %>% titles("Text 1.0", "My Nice Text") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 12) %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", "Right") %>% add_content(txt) %>% page_footer("Left1", "Center1", "Right1") %>% footnotes("My footnote 1", "My footnote 2") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-3: Three page text spec increased margins works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test3.pdf") cnttxt <- paste(rep(cnt, 15), collapse = "") txt <- create_text(cnttxt, width = 6) %>% titles("Text 1.0", "My Nice Text", align = "left") %>% titles("Text 1.0", "My Nice Text", align = "right") %>% footnotes("My footnote 1", "My footnote 2", align = "left") %>% footnotes("My footnote 3", "My footnote 4", align = "right") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% set_margins(top = 2, bottom = 2) %>% page_header("Left", c("Right1", "Page [pg] of [tpg]")) %>% add_content(txt) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 6) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-4: Two page text spec works as expected in 10pt font.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test4.pdf") cnttxt <- paste(rep(cnt, 12), collapse = "") txt <- create_text(cnttxt, width = 6) %>% title_header("Text 1.0", right = "My Nice Text", blank_row = "above", width = "page") %>% title_header("Text 2.0", right = "My Nice Text2", blank_row = "below", width = "page") %>% footnotes("My footnote 1", "My footnote 2", width = "page") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 10) %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", "Right") %>% add_content(txt) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-5: Two page text spec works as expected in 8pt font.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test5.pdf") cnttxt <- paste(rep(cnt, 20), collapse = "") txt <- create_text(cnttxt) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 8) %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", "Right") %>% add_content(txt) %>% page_footer("Left1", "Center1", "Page [pg] of [tpg]") %>% titles("Text 1.0", "My Nice Text", bold = TRUE) %>% footnotes("My footnote 1", "My footnote 2") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-6: One page table works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test6.pdf") dat <- mtcars[1:15, ] attr(dat[[2]], "label") <- "Cylin." rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape", units = "inches") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table", borders = "top", bold = TRUE) %>% add_content(create_table(dat, borders = "outside")) %>% footnotes("My footnote 1", "My footnote 2", borders = c("top", "bottom"), blank_row = "above", valign = "bottom") %>% page_footer("Left1", "Center1", "Right1", blank_row = "above") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-7: Multi page table works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test7.pdf") dat <- iris tbl <- create_table(dat, borders = "none") %>% titles("Table 1.0", "My Nice Irises", "Another Title") %>% define(Sepal.Length, label = "Sepal Length", width = 1, align = "center") %>% define(Sepal.Width, label = "Sepal Width", width = 1, align = "centre") %>% define(Species, blank_after = TRUE) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 12, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1")) %>% add_content(tbl, blank_row = "none") %>% page_footer("Page [pg] of [tpg]", "Page [pg] of [tpg]", "Page [pg] of [tpg]") %>% footnotes("My footnote 1", "My footnote 2") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 8) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-8: Portrait table works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test8.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 8, orientation = "portrait") %>% # set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% footnotes("My footnote 1", "My footnote 2") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 11) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-9: Wide table works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test9.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, first_row_blank = TRUE) %>% column_defaults(width = 1) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "portrait") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% footnotes("My footnote 1", "My footnote 2", valign = "top") %>% # Works! page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-10: Preview works as expected.", { fp <- file.path(base_path, "pdf2/test10.pdf") dat <- iris tbl <- create_table(dat, borders = "none") %>% titles("Table 1.0", "My Nice Irises", "Another Title") %>% footnotes("My footnote 1", "My footnote 2") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 12, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1")) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt, preview = 2) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) }) # Basic Tests 11 - 20 ------------------------------------------------------ # This is awesome. Shows cell wrapping, page break, and valign # Very good for testing. test_that("pdf2-11: Forced page wrap works as expected.", { fp <- file.path(base_path, "pdf2/test11.pdf") dat <- data.frame(labels = rownames(mtcars), mtcars) tbl <- create_table(dat, borders = "all") %>% titles("Table 1.0", "My Nice Irises", "Another Title") %>% footnotes("My footnote 1", "My footnote 2", valign = "bottom") %>% define(labels, id_var = TRUE) %>% define(wt, page_wrap = TRUE) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 12, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1")) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Page [pg] of [tpg]") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 4) }) # Fix borders test_that("pdf2-12: Table Borders work as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test12.pdf") dat <- mtcars[1:14, ] # c("left", "right", "bottom", "top") tbl <- create_table(dat, borders = c("all")) %>% define(mpg, label = "Miles Per Gallon") %>% titles("Table 1.0", "My Nice Table", borders = "outside", blank_row = "above", width = "content") %>% footnotes("My footnote 1", "My footnote 2", borders = "outside") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 12, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "none") %>% add_content(tbl, align = "right") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 11) } else expect_equal(TRUE, TRUE) }) # Nice. test_that("pdf2-13: Spanning headers work as expected.", { fp <- file.path(base_path, "pdf2/test13.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, borders = c("top", "bottom")) %>% spanning_header(cyl, disp, "Span 1 and go an go", n = 10, label_align = "left") %>% spanning_header(hp, wt, "Span 2", n = 11, underline = TRUE) %>% spanning_header(qsec, vs, "Span 3") %>% spanning_header(drat, gear, "Super Duper\n Big Ol' Span", n = 25, level = 2) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% footnotes("My footnote 1", "My footnote 2") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-14: Labels and show_cols work as expected.", { fp <- file.path(base_path, "pdf2/test14.pdf") dat <- mtcars[1:15, ] attr(dat$mpg, "label") <- "Miles Per Gallon" attr(dat$cyl, "label") <- "Cylinders" tbl <- create_table(dat, show_cols = c("mpg", "hp", "cyl", "disp", "drat")) %>% define(mpg, width = 1.25) %>% define(disp, label = "Displacement") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% footnotes("My footnote 1", "My footnote 2") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-15: Valign on report footnotes works as expected.", { fp <- file.path(base_path, "pdf2/test15.pdf") dat <- iris[1:100, ] tbl <- create_table(dat) %>% define(Species, page_break = TRUE) rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 9, orientation = "portrait") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% footnotes("My footnote 1", "My footnote 2", valign = "top") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 4) expect_equal(length(res$column_widths[[1]]), 5) class(dat$Species) }) # Works test_that("pdf2-16: Valign on table footnotes works as expected.", { fp <- file.path(base_path, "pdf2/test16.pdf") dat <- iris[1:100, ] tbl <- create_table(dat) %>% footnotes("My footnote 1", "My footnote 2", valign = "bottom") %>% define(Species, page_break = TRUE) rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 10, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 4) expect_equal(length(res$column_widths[[1]]), 5) }) test_that("pdf2-17: Title header on table works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test17.pdf") dat <- iris[1:25, ] tbl <- create_table(dat, width = 9) %>% title_header("Table 1.0", "My Nice Table", right = c("Right1", "Right2", "Page [pg] of [tpg]")) %>% footnotes("My footnote 1", "My footnote 2") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 10, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-18: Title header on report works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test18.pdf") dat <- iris[1:50, ] tbl <- create_table(dat) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Page [pg] of [tpg]") %>% title_header("Table 1.0", "My Nice Table", right = c("Page [pg] of [tpg]", "Right2", "Right3")) %>% footnotes("My footnote 1", "My footnote 2", valign = "bottom") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) expect_equal(length(res$column_widths[[1]]), 5) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-19: Title and Footnote borders work as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test19.pdf") dat <- iris[1:20, ] tbl <- create_table(dat, borders = c("all"), first_row_blank = FALSE) %>% titles("Tableg 1.0", "My Nice Report with Borders", # "A third titleg what happens when it wraps around I want to know what happens will it work", borders = "outside", #c("top", "bottom"), #c("top", "bottom", "left", "right"), blank_row = "both", align = "left", font_size = 10) %>% #titles("Just to mess it up", borders = "outside", blank_row = "both") %>% footnotes("My footnote 1", "My footnote 2", # "A third footnoteg what happens when it wraps around I want to know what happens will it work", valign = "top", align = "right", borders = "all", #c("top", "bottom", "left", "right"), blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% page_header("Left", "Right", blank_row = "none") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl, align = "right") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) } else expect_equal(TRUE, TRUE) }) # Best to try different combinations of blank rows. test_that("pdf2-20: Title Header borders work as expected.", { fp <- file.path(base_path, "pdf2/test20.pdf") dat <- iris[1:25, ] tbl <- create_table(dat, borders = "all") %>% title_header("Table 1.0", "My Nice Report with Borders ", # that keep going and going right = c("Right2", "Right3"), borders = c("outside"), blank_row = "none") %>% footnotes("My footnote 1", "My footnote 2", valign = "top", borders = c("top", "bottom", "left", "right"), blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% options_fixed(line_size = 40) %>% add_content(tbl, align = "right") %>% page_header("Left", "Right") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) }) # # Basic Tests 21 - 30 ------------------------------------------------------ # Works unless drat column is too narrow and spanning label wraps unexpectedly test_that("pdf2-21: Page wrap with spanning header works as expected.", { fp <- file.path(base_path, "pdf2/test21.pdf") df <- data.frame(vehicle = rownames(mtcars), mtcars, stringsAsFactors = FALSE) rownames(df) = NULL tbl <- create_table(df) %>% spanning_header(2, 5, label = "Span 1", label_align = "center", n = 10) %>% spanning_header(6, 8, label = "Span 2", label_align = "center", n = 10) %>% spanning_header(9, 12, label = "Span 3", label_align = "center", n = 10) %>% spanning_header(6, 12, label = "Super Span", label_align = "center", level = 2) %>% define(vehicle, label = "Vehicle", id_var = TRUE) %>% define(mpg, format = "%.1f") %>% define(drat, width = 1) %>% define(wt, page_wrap = TRUE) %>% define(vs, page_wrap = TRUE) rpt <- create_report(fp, output_type = "PDF", orientation = "portrait", font = fnt) %>% add_content(tbl) %>% titles("Table 1.0", "MTCARS Subset Test") %>% footnotes("My footnote") %>% page_header("Left") %>% page_footer("Left", right = "Right") #print(rpt) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 3) }) # This is a good one for testing height calculations. Looks good for now. test_that("pdf2-22: Page by works as expected.", { fp <- file.path(base_path, "pdf2/test22.pdf") dat <- iris tbl <- create_table(dat, borders = "all") %>% titles("Table 1.0", "My Nice Report with a Page By", borders = "outside", blank_row = "none") %>% page_by(Species, label = "Species", align = "center", borders = "all", blank_row = "none") %>% footnotes("My footnote 1", "Page [pg] of [tpg]", borders = "none", align = "right") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_header("Page [pg] of [tpg]", "Page [pg] of [tpg]") %>% page_footer("Page [pg] of [tpg]", "Page [pg] of [tpg]", "Page [pg] of [tpg]") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 7) expect_equal(length(res$column_widths[[1]]), 5) }) test_that("pdf2-23: Two contents on one page works as expected.", { fp <- file.path(base_path, "pdf2/test23.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat) %>% titles("Table 1.0", "My Nice Table") %>% footnotes("My footnote 1", "My footnote 2") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% add_content(tbl, page_break = FALSE, blank_row = "below") %>% add_content(create_text(cnt, width = 5), align = "center") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) # Working. test_that("pdf2-24: Two tables one headerless works as expected.", { fp <- file.path(base_path, "pdf2/test24.pdf") dat <- mtcars dat2 <- mtcars[16:20, ] tbl <- create_table(dat) %>% titles("Table 1.0", "My Nice Table") %>% column_defaults(width = .5) tbl2 <- create_table(dat2, headerless = TRUE) %>% column_defaults(width = .5) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% add_content(tbl, page_break = FALSE, blank_row = "none") %>% add_content(tbl2, align = "center") %>% page_footer("Left1", "Center1", "Right1") %>% footnotes("My footnote 1", "My footnote 2") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 2) }) # OK except plot not centered in borders. # And footnotes have double line above. test_that("pdf2-25: Simplest PDF2 Plot works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test25.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() plt <- create_plot(p, height = 4, width = 8, borders = c("top", "bottom", "all")) %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot", borders = "outside", blank_row = "none") %>% #, font_size = 12, bold = TRUE) %>% footnotes("* Motor Trend, 1974", borders = "outside", blank_row = "above", valign = "top", width = "content", align = "center") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size =fsz) %>% page_header("Client", "Study: XYZ") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, align = "center") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-26: Plot, Table and Text on same page works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test26.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() plt <- create_plot(p, height = 3.5, width = 7) %>% titles("My plot title") tbl <- create_table(mtcars[1:3, ]) %>% titles("My table Title") txt <- create_text("Here is some text", align = "center") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot", blank_row = "below") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, page_break = FALSE, blank_row = "none") %>% add_content(tbl, page_break = FALSE) %>% add_content(txt) %>% footnotes("* Motor Trend, 1974") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else { expect_equal(TRUE, TRUE) } }) # Works test_that("pdf2-27: Plot with page by on plot works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test27.pdf") dat <- mtcars[order(mtcars$cyl), ] p <- ggplot(dat, aes(x=disp, y=mpg)) + geom_point() #dats <- split(p$data, p$data$grp) #tbl <- create_table(dat[1:3, ]) plt <- create_plot(p, height = 4, width = 8, borders = "all") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot", blank_row = "none", borders = "all") %>% page_by(cyl, "Cylinders2: ", blank_row = "below", borders = "all") %>% footnotes("* Motor Trend, 1974", borders = "all") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, align = "center") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 3) } else { expect_equal(TRUE, TRUE) } }) # Also works test_that("pdf2-28: Plot with page by on report works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test28.pdf") dat <- mtcars[order(mtcars$cyl), ] p <- ggplot(dat, aes(x=disp, y=mpg)) + geom_point() #dats <- split(p$data, p$data$grp) #tbl <- create_table(dat[1:3, ]) plt <- create_plot(p, height = 4, width = 8) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot", blank_row = "none", borders = "none") %>% set_margins(top = 1, bottom = 1) %>% page_by(cyl, "Cylinders: ") %>% add_content(plt) %>% footnotes("* Motor Trend, 1974", borders = "none") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 3) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-29: Simplest Plot with valign top works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test29.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() plt <- create_plot(p, height = 4, width = 8) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, align = "center") %>% footnotes("* Motor Trend, 1974", valign = "top") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-30: Simplest PDF Plot with valign bottom works as expected.", { library(ggplot2) fp <- file.path(base_path, "pdf2/test30.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() plt <- create_plot(p, height = 4, width = 8) %>% footnotes("* Motor Trend, 1974", valign = "bottom") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, align = "center") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) # # Basic Tests 31 - 40 ------------------------------------------------------ test_that("pdf2-31: Simplest PDF with valign top works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test31.pdf") txt <- create_text(cnt, width = 6, borders = "none") %>% titles("Text 1.0", "MTCARS Miles per Cylinder Text", borders = "none", blank_row = "none") %>% footnotes("* Motor Trend, 1974", valign = "top", borders = "none", blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% set_margins(top = 1, bottom = 1) %>% add_content(txt, align = "center") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-32: Simplest Text with valign bottom works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test32.pdf") txt <- create_text(cnt, width = 6) %>% footnotes("* Motor Trend, 1974", valign = "bottom") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot") %>% set_margins(top = 1, bottom = 1) %>% add_content(txt, align = "center") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) # Works test_that("pdf2-33: Table with long cell and label values wraps as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test33.pdf") # Setup arm <- c(rep("A", 5), rep("B", 5)) subjid <- 100:109 name <- c("Quintana, Gabriel", "Allison, Blas", "Minniear, Presley", "al-Kazemi, Najwa \nand more and more", "Schaffer, Ashley", "Laner, Tahma", "Perry, Sean", "Crews, Deshawn Joseph", "Person, Ladon", "Smith, Shaileigh") sex <- c("M", "F", "F", "M", "M", "F", "M", "F", "F", "M") age <- c(41, 53, 43, 39, 47, 52, 21, 38, 62, 26) # Create data frame df1 <- data.frame(arm, subjid, name, sex, age, stringsAsFactors = FALSE) tbl1 <- create_table(df1, first_row_blank = FALSE, borders = "all") %>% define(subjid, label = "Subject ID for a patient", n = 10, align = "left", width = 1) %>% define(name, label = "Subject Name", width = 1) %>% define(sex, label = "Sex", n = 10, align = "center") %>% define(age, label = "Age", n = 10) %>% define(arm, label = "Arm", blank_after = TRUE, dedupe = TRUE) %>% titles("Table 1.0", align = "center", borders = "all") %>% footnotes("Here", borders = "all") rpt <- create_report(fp, output_type = "PDF", font = "Courier", font_size = fsz) %>% add_content(tbl1) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) # Working test_that("pdf2-34: Table with break between sections works as expected.", { fp <- file.path(base_path, "pdf2/test34.pdf") # Setup subjid <- 100:109 name <- c("Quintana, Gabriel", "Allison, Blas", "Minniear, Presley", "al-Kazemi, Najwa", "Schaffer, Ashley", "Laner, Tahma", "Perry, Sean", "Crews, Deshawn Joseph", "Person, Ladon", "Smith, Shaileigh") sex <- c("M", "F", "F", "M", "M", "F", "M", "F", "F", "M") age <- c(41, 53, 43, 39, 47, 52, 21, 38, 62, 26) arm <- c(rep("A", 5), rep("B", 5)) # Create data frame df1 <- data.frame(subjid, name, sex, age, arm) tbl1 <- create_table(df1, first_row_blank = TRUE, borders = "all") %>% define(subjid, label = "Subject ID", align = "right", label_align = "right", width = 1) %>% define(name, label = "Subject Name", width = 1, align = "right") %>% define(sex, label = "Sex", align = "right") %>% define(age, label = "Age", align = "right") %>% define(arm, label = "Arm", blank_after = TRUE, dedupe = TRUE, align = "right") #%>% # spanning_header(sex, arm, label = "Here is a spanning header") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header(left = "Experis", right = c("Study ABC", "Status: Closed")) %>% # options_fixed(line_count = 46) %>% titles("Table 1.0", "Analysis Data Subject Listing\n And more stuff", "Safety Population", align = "center") %>% footnotes("Program Name: table1_0.R", "Here is a big long footnote that is going to wrap\n at least once") %>% page_footer(left = "Time", center = "Confidential", right = "Page [pg] of [tpg]") %>% add_content(tbl1) res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-35: Title Header and page header/footer wrapping work as expected.", { fp <- file.path(base_path, "pdf2/test35.pdf") dat <- iris[1:10, ] tbl <- create_table(dat, borders = "all") %>% title_header("Table 1.0", "My Nice Report with Borders that will go on and on", right = c("Right1", "Right2", "Right3 long enough to wrap around at least once"), borders = "none", blank_row = "none") %>% footnotes("My footnote 1", "My footnote 2", valign = "top", borders = "none", blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl, align = "left") %>% page_header(c("Left1", "Left2\nwrap"), "Right 1") %>% page_footer("Left1", "Center1 here is a whole bunch of stuff to try and make it wrap", "Right1\nwrap\n and wrap again") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) }) test_that("pdf2-36: Title and Footnote widths work as expected on table.", { fp <- file.path(base_path, "pdf2/test36.pdf") dat <- iris[1:20, ] tbl <- create_table(dat) %>% titles("Table 1.0", "My Nice Report with Widths", width = "page", align = "left") %>% footnotes("My footnote 1", "My footnote 2", valign = "top", width = "page") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) }) test_that("pdf2-37: Title and Footnote widths work as expected on report", { fp <- file.path(base_path, "pdf2/test37.pdf") dat <- iris[1:20, ] tbl <- create_table(dat, borders = "all") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") %>% titles("Table 1.0", "My Nice Report with Widths", borders = c("top", "bottom", "left", "right"), width = 7, align = "left") %>% footnotes("My footnote 1", "My footnote 2", valign = "top", borders = c("top", "bottom", "left", "right"), width = 7) res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) }) test_that("pdf2-38: Title and Footnote specific widths work as expected.", { fp <- file.path(base_path, "pdf2/test38.pdf") dat <- iris[1:20, ] tbl <- create_table(dat, borders = "all") %>% titles("Table 1.0", "My Nice Report with Borders", borders = c("outside"), width = 7, align = "left") %>% footnotes("My footnote 1", "My footnote 2", valign = "top", borders = c("top", "bottom", "left", "right"), width = 7) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) expect_equal(length(res$column_widths[[1]]), 5) }) # Works test_that("pdf2-39: One page table works as expected in centimeters and times.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test39.pdf") dat <- mtcars[1:15, ] attr(dat[[2]], "label") <- "Cylin." rpt <- create_report(fp, output_type = "PDF", font = "Times", font_size = fsz, orientation = "landscape", units = "cm") %>% set_margins(top = 3, bottom = 3) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table") %>% add_content(create_table(dat)) %>% footnotes("My footnote 1", "My footnote 2") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) # Title not aligned properly test_that("pdf2-40: One page table works as expected in courier and cm.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test40.pdf") dat <- mtcars[1:15, ] attr(dat[[2]], "label") <- "Cylin." rpt <- create_report(fp, output_type = "PDF", font = "Courier", font_size = fsz, orientation = "landscape", units = "cm") %>% set_margins(top = 3, bottom = 3) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% titles("Table 1.0", "My Nice Table", align = "center") %>% add_content(create_table(dat)) %>% footnotes("My footnote 1", "My footnote 2") %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) # # Basic Tests 41 - 50 ------------------------------------------------------ # Good for testing borders and spacing are working correctly *** test_that("pdf2-41: Page by with borders works as expected.", { fp <- file.path(base_path, "pdf2/test41.pdf") dat <- iris brdrs <- "none" tbl <- create_table(dat, borders = "all", first_row_blank = TRUE) %>% titles("Table 1.0", "My Nice Report with a Page By", borders = "all", #c("top", "bottom"), blank_row = "none", align = "left", font_size = 12) %>% page_by(Species, label = "Species: ", align = "left", borders = "all", # c("top", "bottom"), blank_row = "none") %>% footnotes("My footnote 1", "My footnote 2", borders = c("all"), blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 10, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 7) expect_equal(length(res$column_widths[[1]]), 5) }) # Test for borders and page wraps test_that("pdf2-42: Long table with borders and footnotes on report.", { fp <- file.path(base_path, "pdf2/test42.pdf") dat <- data.frame(labels = rownames(mtcars), mtcars) tbl <- create_table(dat, borders = "all") %>% define(labels, id_var = TRUE) %>% define(wt, page_wrap = TRUE) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = 12, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1")) %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Page [pg] of [tpg]") %>% titles("Table 1.0", "My Nice Irises", "Another Title") %>% footnotes("My footnote 1", "My footnote 2", valign = "bottom") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 4) }) # Works test_that("pdf2-43: use_attributes parameter table works as expected.", { fp1 <- file.path(base_path, "pdf2/test43a.pdf") fp2 <- file.path(base_path, "pdf2/test43b.pdf") fp3 <- file.path(base_path, "pdf2/test43c.pdf") dat <- mtcars[1:10, ] attr(dat$mpg, "label") <- "Miles per gallon" attr(dat$cyl, "format") <- "%.1f" attr(dat$hp, "width") <- 2 fattr(dat$vs) <- list(width = 2, justify = "center") tbl <- create_table(dat) # Test default rpt <- create_report(fp1, output_type = "PDF", font = fnt) %>% add_content(tbl) res <- write_report(rpt) expect_equal(file.exists(fp1), TRUE) expect_equal(res$pages, 1) # Test none tbl <- create_table(dat, use_attributes = "none") rpt <- create_report(fp2, output_type = "PDF", font = fnt) %>% add_content(tbl) res <- write_report(rpt) expect_equal(file.exists(fp2), TRUE) # Test some tbl <- create_table(dat, use_attributes = c("format", "width")) rpt <- create_report(fp3, output_type = "PDF", font = fnt) %>% add_content(tbl) res <- write_report(rpt) expect_equal(file.exists(fp3), TRUE) expect_equal(res$pages, 1) }) # Works test_that("pdf2-45: Title bold and font size works as expected.", { fp <- file.path(base_path, "pdf2/test45.pdf") dat <- mtcars[1:15, ] attr(dat[[2]], "label") <- "Cylin." attr(dat[[2]], "width") <- 1 attr(dat[[2]], "justify") <- "center" tbl <- create_table(dat, borders = "outside") %>% titles("Table 1.0", paste("My Nice Table that will go on and on and eventually will", "wrap around I hope so maybe I can test this feature of the ", "application"), borders = c("none"), width = "content", font_size = 14, bold = TRUE) %>% footnotes("My footnote 1", "My footnote 2", borders = "none", align = "left", width = "content") %>% define(wt, width = 1, label = "Weight", align = "center", label_align = "right") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 9, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Page [pg] of [tpg]"), blank_row = "below") %>% add_content(tbl, align = "center") %>% page_footer("Left1", "Center1", paste("Right1 here is one that is really, ", "really long that I hope will wrap around")) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-46: 9 pt font inches works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test46.pdf") rpt <- create_report(fp, output_type = "PDF", font_size = 9, font = "Courier", orientation = "portrait") %>% page_header("left", "right") %>% titles("IRIS Data Frame") %>% add_content(create_table(iris)) %>% page_footer("left", "center", "Page [pg] of [tpg]") %>% set_margins(top = 1, bottom = 1) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) # Working test_that("pdf2-47: 9 pt font cm works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test47.pdf") rpt <- create_report(fp, output_type = "PDF", font_size = 9, font = "Courier", orientation = "portrait", units = "cm") %>% page_header("left", "right") %>% titles("IRIS Data Frame") %>% add_content(create_table(iris), align = "left") %>% page_footer("left", "center", "Page [pg] of [tpg]") %>% set_margins(top = 1, bottom = 1) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-48: 11 pt font inches works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test48.pdf") rpt <- create_report(fp, output_type = "PDF", font_size = 11, font = "Courier", orientation = "portrait") %>% page_header("left", "right") %>% titles("IRIS Data Frame") %>% add_content(create_table(iris)) %>% page_footer("left", "center", "Page [pg] of [tpg]") %>% set_margins(top = 1, bottom = 1) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-49: 11 pt font cm works as expected.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/test49.pdf") rpt <- create_report(fp, output_type = "PDF", font_size = 11, font = "Courier", orientation = "portrait", units = "cm") %>% page_header("left", "right") %>% titles("IRIS Data Frame") %>% add_content(create_table(iris), align = "center") %>% page_footer("left", "center", "Page [pg] of [tpg]") %>% set_margins(top = 1, bottom = 1) res <- write_report(rpt) res$column_widths expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-50: Spanning headers borders work as expected.", { fp <- file.path(base_path, "pdf2/test50.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, borders = c("all")) %>% spanning_header(cyl, disp, "Span 1", label_align = "left") %>% spanning_header(hp, wt, "Span 2", underline = FALSE) %>% spanning_header(qsec, vs, "Span 3", n = 10) %>% spanning_header(drat, gear, "Super Duper\nWrapped Span", n = 11, level = 2) %>% titles("Table 1.0", "My Nice Table", borders = "outside") %>% footnotes("My footnote 1", "My footnote 2", borders = "outside") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) res <- write_report(rpt) res res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) # Basic Tests 51 > -------------------------------------------------------- # Very good report for testing multiple content wraps test_that("pdf2-51: Plot, Long Table and Long Text on same report works as expected.", { if (dev) { library(ggplot2) fp <- file.path(base_path, "pdf2/test51.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() plt <- create_plot(p, height = 3.5, width = 7) %>% titles("My plot title", blank_row = "above") tbl <- create_table(mtcars[1:17, ]) %>% titles("My table Title", blank_row = "above") %>% footnotes("Table Footnote", blank_row = "above") txt <- create_text(cnt, align = "center", width = 6) %>% titles("My Text Title", blank_row = "none") %>% footnotes("Text Footnotes", blank_row = "above") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot", blank_row = "none") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, page_break = FALSE, blank_row = "none") %>% add_content(tbl, page_break = FALSE, blank_row = "none") %>% add_content(txt, blank_row = "below", page_break = FALSE) %>% add_content(txt, blank_row = "none") %>% footnotes("* Motor Trend, 1974") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 3) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-52: PDF Image file works as expected.", { if (dev == TRUE) { library(ggplot2) fp <- file.path(base_path, "pdf2/test52.pdf") p <- ggplot(mtcars, aes(x=cyl, y=mpg)) + geom_point() pltpath <- file.path(base_path, "pdf2/test52.jpg") ggsave(pltpath, width = 8, height = 4, units = "in", dpi = 300) plt <- create_plot(pltpath, height = 4, width = 8) rpt <- create_report(fp, output_type = "PDF", font = "Arial") %>% page_header("Client", "Study: XYZ") %>% titles("Figure 1.0", "MTCARS Miles per Cylinder Plot") %>% set_margins(top = 1, bottom = 1) %>% add_content(plt, align = "center") %>% footnotes("* Motor Trend, 1974") %>% page_footer("Time", "Confidential", "Page [pg] of [tpg]") res <- write_report(rpt) #print(res) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-53: Header_bold works as expected", { dat <- mtcars[1:10, 1:3] fp <- file.path(base_path, "pdf2/test53.pdf") tbl <- create_table(dat, header_bold = TRUE, borders = "all") %>% column_defaults(width = 1) %>% titles("Report 1.0", "Simple Report", borders = "outside", blank_row = "none", bold = TRUE) %>% footnotes("My footnote", blank_row = "none") rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Arial") %>% add_content(tbl) %>% set_margins(top = 1) res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-54: Titles and footnotes in header and footer works as expected", { dat <- mtcars[1:10, 1:3] fp <- file.path(base_path, "pdf2/test54.pdf") tbl <- create_table(dat) %>% column_defaults(width = 1) %>% titles("My table title") %>% footnotes("My table footnote") rpt <- create_report(fp, orientation = "landscape", output_type = "PDF", font = "Arial") %>% add_content(tbl) %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", "Right") %>% titles("My report title") %>% titles("Report 1.0", "Simple Report", blank_row = "none", header = TRUE) %>% footnotes("My report footnote") %>% footnotes("My footer footnote", "Another footer footnote", "And another", blank_row = "none", footer = TRUE) %>% page_footer("Left", "Center", "Right") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-55: Label row is one cell.", { fp <- file.path(base_path, "pdf2/test55.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - 21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') ll <- "Here is a super long label to see if it can span the entire table." # Create table tbl <- create_table(df, first_row_blank = TRUE, borders = c("all")) %>% stub(c("var", "label"), width = 1) %>% define(var, blank_after = TRUE, label_row = TRUE, format = c(ampg = ll, cyl = "Cylinders")) %>% define(label, indent = .25) %>% define(A, label = "Group A", align = "center", n = 19) %>% define(B, label = "Group B", align = "center", n = 13) # Create report and add content rpt <- create_report(fp, orientation = "landscape", output_type = "PDF", font = "Times") %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = Sys.time(), center = "Confidential", right = "Page [pg] of [tpg]") res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-56: Blank after on invisible column.", { fp <- file.path(base_path, "pdf2/test56.pdf") tbl <- create_table(iris, borders = "all") %>% define(Species, blank_after = TRUE, visible = FALSE) rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% page_header("Left", "Right") %>% add_content(tbl) %>% page_footer("left", "", "right") %>% titles("Table 1.0", "IRIS Data Frame", blank_row = "below") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-57: Page header width works.", { fp <- file.path(base_path, "pdf2/test57.pdf") tbl <- create_table(iris[1:10, ], borders = "all") %>% define(Species, blank_after = TRUE, visible = FALSE) rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% page_header(paste0("Left and here is a really long left ", "cell text to put it and more and more"), "Right", width = 8) %>% add_content(tbl) %>% page_footer("left", "", "right") %>% titles("Table 1.0", "IRIS Data Frame", blank_row = "below") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-58: Glue feature works.", { library(common) fp <- file.path(base_path, "pdf2/test58.pdf") tbl <- create_table(mtcars[1:10, ], borders = "outside") %>% spanning_header(1, 4, label = "My span{subsc('4')}") %>% define(mpg, label = "Mpg{subsc('3')}") myvar <- "23" rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% page_header(c("Left {supsc('2')}really long left ", "cell text to put it{supsc('3')} and more and more"), "Right{supsc('x')}") %>% add_content(tbl) %>% page_footer(c("left1{supsc('5')}", "left2{supsc('6')}"), "", "right{supsc('7')}") %>% titles("Table 1.0{supsc('1')}", "IRIS Data Frame{{myvar}}", blank_row = "below") %>% footnotes("Here is a footnote{subsc('a')}", "And another{subsc('9')}") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-59: Carriage return in label row works.", { fp <- file.path(base_path, "pdf2/test59.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - \n21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') ll <- "Here is a super long label to \nsee if it can span the entire table." # Create table tbl <- create_table(df, first_row_blank = TRUE, borders = c("all")) %>% stub(c("var", "label")) %>% define(var, blank_after = TRUE, label_row = TRUE, format = c(ampg = ll, cyl = "Cylinders")) %>% define(label, indent = .25) %>% define(A, label = "Group A", align = "center", n = 19) %>% define(B, label = "Group B", align = "center", n = 13) # Create report and add content rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Times") %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = "Left", center = "Confidential", right = "Page [pg] of [tpg]") res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-60: Spanning headers borders work as expected with no title border.", { fp <- file.path(base_path, "pdf2/test60.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, borders = c("top", "bottom")) %>% spanning_header(cyl, disp, "Span 1", label_align = "left") %>% spanning_header(hp, wt, "Span 2", underline = FALSE) %>% spanning_header(qsec, vs, "Span 3", n = 10) %>% spanning_header(drat, gear, "Super Duper\nWrapped Span", n = 11, level = 2) %>% titles("Table 1.0", "My Nice Table", borders = c("none"), blank_row = "none", columns = 2) %>% footnotes("My footnote 1", "My footnote 2", borders = "none", blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% page_header("Left", "Right") %>% set_margins(top = 1, bottom = 1) %>% add_content(tbl) res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-61: Title columns work 1 column.", { fp <- file.path(base_path, "pdf2/test61.pdf") tbl <- create_table(iris[1:15, ], borders = "all") %>% titles("Table 1.0\nsecond row", "IRIS Data Frame2", blank_row = "above", columns = 1, align = "center", borders = "outside") rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% add_content(tbl) %>% page_header("left", "right") %>% page_footer("left", "", "right") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-62: Title columns work 2 columns.", { fp <- file.path(base_path, "pdf2/test62.pdf") tbl <- create_table(iris[1:15, ], borders = "all") %>% titles("Table 1.0\nsecond row", "IRIS Data Frame", "Left", "Right", "mo\nre", blank_row = "below", columns = 2, borders = "all") rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% add_content(tbl) %>% page_header("left", "right") %>% page_footer("left", "", "right") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-63: Title columns work 3 columns.", { fp <- file.path(base_path, "pdf2/test63.pdf") rght <- paste("Here is a big long text string to see how the automatic", "wrapping is happing in a reduced size cell on the right.") tbl <- create_table(iris[1:15, ], borders = "all") %>% define(Species, blank_after = TRUE, visible = FALSE) %>% titles("Table 1.0\nsecond row", "IRIS Data Frame", " My right thing", "", "Center", rght, blank_row = "below", columns = 3, borders = "all") rpt <- create_report(fp, output_type = "PDF", font = "Courier", font_size = 10) %>% add_content(tbl) %>% page_header("left", "right") %>% page_footer("left", "", "right") %>% footnotes("Here is a footnote", "And another", "A", "Here is a longer footnote to see if I can figure out the alignment pattern.", align = "right") res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-64: Multiple title blocks work as expected.", { fp <- file.path(base_path, "pdf2/test64.pdf") tbl <- create_table(iris[1:15, ], borders = "all") %>% define(Species, blank_after = TRUE, visible = FALSE) %>% titles("Table 1.0", "IRIS Data Frame", blank_row = "none", columns = 1, borders = "all") %>% titles("Table 2.0", "IRIS Data Frame2", "Left", "Right", blank_row = "none", columns = 2, borders = "all") %>% titles("Table 3.0", "IRIS Data Frame3", "My right thing", "", "Center", blank_row = "both", columns = 3, borders = "outside") rpt <- create_report(fp, output_type = "PDF", font = "Courier") %>% add_content(tbl) %>% page_header("left", "right") %>% page_footer("left", "", "right") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-65: Custom page size works as expected.", { fp <- file.path(base_path, "pdf2/test65.pdf") tbl <- create_table(iris[1:15, ]) %>% define(Species, visible = FALSE) ttl <- c("Title1", "Title2", "Title3") rpt <- create_report(fp, output_type = "PDF", font = "Courier", paper_size = c(6.5, 7.5), orientation = "portrait") %>% add_content(tbl) %>% page_header("left", "right") %>% page_footer("left", "", "right") %>% titles(ttl, blank_row = "below", columns = 1, align = "center", borders = "none") %>% footnotes("Here is a footnote", "And another") res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-66: Basic cell style bold works as expected.", { if (dev) { fp <- file.path(base_path, "pdf2/test66.pdf") dat <- mtcars[, 1:5] dat$hpflg <- ifelse(dat$hp > 100, TRUE, FALSE) tbl <- create_table(dat, width = 7) %>% titles("My title") %>% column_defaults(width = .75) %>% define(mpg, width = 1, style = cell_style(bold = TRUE)) %>% define(cyl, width = 1) %>% define(disp, style = cell_style(bold = TRUE)) %>% define(hp, style = cell_style(bold = TRUE, indicator = hpflg)) %>% define(hpflg, visible = FALSE) %>% footnotes("My footnotes", blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = "Arial", orientation = "portrait") %>% add_content(tbl) %>% footnotes("Here", footer = TRUE) res <- write_report(rpt) # file.show(res$modified_path) res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-67: Bolding works with stub.", { fp <- file.path(base_path, "pdf2/test67.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - 21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') df$cylflg <- ifelse(df$var == "cyl", TRUE, FALSE) # Create table tbl <- create_table(df, first_row_blank = TRUE) %>% column_defaults(vars = c("stub", "A"), style = cell_style(bold = TRUE, indicator = cylflg)) %>% stub(c("var", "label"), style = cell_style(bold = TRUE, indicator = "labelrow")) %>% define(var, blank_after = TRUE, label_row = TRUE, format = c(ampg = "Miles Per Gallon", cyl = "Cylinders")) %>% define(label, indent = .25) %>% define(A, label = "Group A", align = "center", n = 19, style = cell_style(bold = TRUE, indicator = cylflg)) %>% define(B, label = "Group B", align = "center", n = 13, style = cell_style(bold = TRUE, indicator = "datarow")) %>% define(cylflg, visible = FALSE) # Create report and add content rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Times") %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = "Left", center = "Confidential", right = "Page [pg] of [tpg]") res <- write_report(rpt) # file.show(res$modified_path) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-68: Bold cell style with column defaults.", { if (dev) { fp <- file.path(base_path, "pdf2/test68.pdf") dat <- mtcars[, 1:5] dat$hpflg <- ifelse(dat$hp > 100, TRUE, FALSE) tbl <- create_table(dat) %>% titles("My title") %>% column_defaults(width = .75, vars = c("cyl", "disp", "hp"), style = cell_style(bold=TRUE, indicator = hpflg)) %>% define(mpg) %>% define(cyl) %>% define(disp) %>% define(hp) %>% define(hpflg, visible = FALSE) %>% footnotes("My footnotes", blank_row = "none") rpt <- create_report(fp, output_type = "PDF", font = "Arial", orientation = "portrait") %>% add_content(tbl) %>% footnotes("Here", footer = TRUE) res <- write_report(rpt) # file.show(res$modified_path) res$column_widths expect_equal(file.exists(fp), TRUE) expect_equal(res$pages, 1) } else { expect_equal(TRUE, TRUE) } }) test_that("pdf2-69: Bolding, column defaults, and stub works.", { fp <- file.path(base_path, "pdf2/test69.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - 21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') df$cylflg <- ifelse(df$var == "cyl", FALSE, TRUE) # Create table tbl <- create_table(df, first_row_blank = TRUE) %>% column_defaults(style = cell_style(bold = TRUE, indicator = cylflg)) %>% stub(c("var", "label"), width = 2, style = cell_style(bold = TRUE, indicator = cylflg)) %>% define(var, blank_after = TRUE, label_row = TRUE, format = c(ampg = "Miles Per Gallon", cyl = "Cylinders")) %>% define(label, indent = .25) %>% define(A, label = "Group A", align = "center", n = 19) %>% define(B, label = "Group B", align = "center", n = 13, style = cell_style(bold = TRUE, indicator = "datarow")) %>% define(cylflg, visible = FALSE) # Create report and add content rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Times") %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = "Left", center = "Confidential", right = "Page [pg] of [tpg]") res <- write_report(rpt) # file.show(res$modified_path) res expect_equal(file.exists(fp), TRUE) }) test_that("pdf2-70: Spanning header bold work as expected.", { fp <- file.path(base_path, "pdf2/test70.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, borders = c( "none")) %>% spanning_header(cyl, disp, "Span 1", label_align = "left") %>% spanning_header(hp, wt, "Span 2", underline = FALSE, bold = TRUE) %>% spanning_header(qsec, vs, "Span 3", n = 10) %>% spanning_header(drat, gear, "Super Duper\nWrapped Span", n = 11, level = 2, bold = TRUE) %>% titles("Table 1.0", "My Nice Table", blank_row = "none", borders = c("top", "bottom")) %>% footnotes("My footnote 1", "My footnote 2", blank_row = "none", borders = c("top", "bottom")) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(res$modified_path), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-71: Italic footnotes work as expected.", { fp <- file.path(base_path, "pdf2/test71.pdf") dat <- mtcars[1:15, ] tbl <- create_table(dat, borders = c( "none")) %>% spanning_header(cyl, disp, "Span 1", label_align = "left") %>% spanning_header(hp, wt, "Span 2", underline = FALSE, bold = FALSE) %>% spanning_header(qsec, vs, "Span 3", n = 10) %>% spanning_header(drat, gear, "Super Duper\nWrapped Span", n = 11, level = 2, bold = FALSE) %>% titles("Table 1.0", "My Nice Table", blank_row = "none", borders = c("top", "bottom")) %>% footnotes("My italic footnote1", "My italic footnote2", italics = TRUE, blank_row = "none", borders = "top") %>% footnotes("My italic footnote", "Page [pg] of [tpg]", blank_row = "none", borders = c("bottom")) rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz, orientation = "landscape") %>% set_margins(top = 1, bottom = 1) %>% page_header("Left", c("Right1", "Right2", "Right3"), blank_row = "below") %>% add_content(tbl) %>% page_footer("Left1", "Center1", "Right1") res <- write_report(rpt) res res$column_widths expect_equal(file.exists(res$modified_path), TRUE) expect_equal(res$pages, 1) }) test_that("pdf2-72: Stub indent.", { fp <- file.path(base_path, "pdf2/test72.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - 21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder and more perhaps more" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') ll <- "Here is a super long label to see if it can span the entire table." # Create table tbl <- create_table(df, first_row_blank = TRUE, borders = c("all")) %>% stub(c("var", "label"), width = .9) %>% define(var, blank_after = TRUE, label_row = TRUE, format = c(ampg = ll, cyl = "Cylinders")) %>% define(label, indent = .25) %>% define(A, label = "Group A", align = "center", n = 19) %>% define(B, label = "Group B", align = "center", n = 13) # Create report and add content rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Times") %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = "Left", center = "Confidential", right = "Page [pg] of [tpg]") res <- write_report(rpt) res expect_equal(file.exists(fp), TRUE) }) # # User Tests -------------------------------------------------------------- # Lots of special characters not working test_that("pdf2-user1: demo table works.", { if (dev) { library(tidyr) library(dplyr) # Data Filepath dir_data <- file.path(data_dir, "data") fp <- file.path(base_path, "pdf2/user1.pdf") # Load Data data_demo <- file.path(dir_data, "dm.csv") %>% read.csv() data_demo <- subset(data_demo, data_demo$ARM != "SCREEN FAILURE") sex_decode <- c("M" = "Male", "F" = "Female") race_decode <- c("WHITE" = "White", "BLACK OR AFRICAN AMERICAN" = "Black or African American", "ASIAN" = "Asian or Pacific Islander", "NATIVE AMERICAN" = "Native American", "UNKNOWN" = "Unknown") arm_pop <- table(data_demo$ARM) demo_age <- data_demo %>% group_by(ARM) %>% summarise(across(.cols = AGE, .fns = list(N = ~ fmt_n(.), Mean = ~ fmt_mean_sd(.), Median = ~ fmt_median(.), `Q1 - Q3` = ~ fmt_quantile_range(.), Range = ~ fmt_range(.) ))) %>% pivot_longer(-ARM, names_to = c("var", "label"), names_sep = "_", values_to = "value") %>% pivot_wider(names_from = ARM, values_from = "value") demo_sex <- data_demo %>% add_count(ARM, SEX, name = "n_SEX") %>% select(ARM, SEX, n_SEX) %>% distinct() %>% pivot_longer(cols = c(SEX), names_to = "var", values_to = "label") %>% pivot_wider(names_from = ARM, values_from = n_SEX, values_fill = 0) %>% mutate(label = factor(label, levels = names(sex_decode), labels = sex_decode), `ARM A` = fmt_cnt_pct(`ARM A`, arm_pop["ARM A"]), `ARM B` = fmt_cnt_pct(`ARM B`, arm_pop["ARM B"]), `ARM C` = fmt_cnt_pct(`ARM C`, arm_pop["ARM C"]), `ARM D` = fmt_cnt_pct(`ARM D`, arm_pop["ARM D"])) demo_race <- data_demo %>% add_count(ARM, RACE, name = "n_RACE") %>% select(ARM, RACE, n_RACE) %>% distinct() %>% pivot_longer(cols = RACE, names_to = "var", values_to = "label") %>% pivot_wider(names_from = ARM, values_from = n_RACE, values_fill = 0) %>% mutate(label = factor(label, levels = names(race_decode), labels = race_decode), `ARM A` = fmt_cnt_pct(`ARM A`, arm_pop["ARM A"]), `ARM B` = fmt_cnt_pct(`ARM B`, arm_pop["ARM B"]), `ARM C` = fmt_cnt_pct(`ARM C`, arm_pop["ARM C"]), `ARM D` = fmt_cnt_pct(`ARM D`, arm_pop["ARM D"])) %>% arrange(var, label) demo <- bind_rows(demo_age, demo_sex, demo_race) #View(demo) # Stub decode block_fmt <- c(AGE = "Age", SEX = "Sex", RACE = "Race") # Define table tbl <- create_table(demo, first_row_blank = TRUE) %>% column_defaults(from = "ARM A", to = "ARM D", width = 1.25) %>% define(var, blank_after = TRUE, dedupe = TRUE, format = block_fmt, label = "") %>% define(label, label = "") %>% define(`ARM A`, align = "center", label = "Placebo", n = 36) %>% define(`ARM B`, align = "center", label = "Drug 10mg", n = 38) %>% define(`ARM C`, align = "center", label = "Drug 20mg", n = 38) %>% define(`ARM D`, align = "center", label = "Competitor", n = 38) # Define Report rpt <- create_report(fp, output_type = "PDF", font = fnt, font_size = fsz) %>% set_margins(top = 1, bottom = 1) %>% options_fixed(font_size = 10) %>% titles("Table 14.1/4", "Demographics and Baseline to Characteristics", "Specify Population Ω µ β ¥ ∑ ≠ ≤ £ ∞ ؈ ლ \Ub8a 鬼") %>% add_content(tbl) %>% footnotes("Special symbols \U221e to mess things up: Ω µ β ¥ ∑ ≠ ≤ £ ∞ ؈ ლ \Ub8a 鬼") %>% footnotes("Special symbols µ Ω £ there to mess things up: ", "Page [pg] of [tpg]", align = "left", italics = TRUE) %>% page_header("Left µ Ω £ ", "Right") %>% page_footer("Time µ Ω £ ", right = "Page [pg] of [tpg]") # Write out report res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) # Borders and spacing need some tweaking test_that("pdf2-user2: demo table with stub works.", { if (dev) { library(tidyr) library(dplyr) # Data Filepath dir_data <- file.path(data_dir, "data") fp <- file.path(base_path, "pdf2/user2.pdf") # Load Data data_demo <- file.path(dir_data, "dm.csv") %>% read.csv() data_demo <- subset(data_demo, data_demo$ARM != "SCREEN FAILURE") sex_decode <- c("M" = "Male", "F" = "Female") race_decode <- c("WHITE" = "White", "BLACK OR AFRICAN AMERICAN" = "Black or African American", "ASIAN" = "Asian or Pacific Islander", "NATIVE AMERICAN" = "Native American", "UNKNOWN" = "Unknown") arm_pop <- table(data_demo$ARM) demo_age <- data_demo %>% group_by(ARM) %>% summarise(across(.cols = AGE, .fns = list(N = ~ fmt_n(.), Mean = ~ fmt_mean_sd(.), Median = ~ fmt_median(.), `Q1 - Q3` = ~ fmt_quantile_range(.), Range = ~ fmt_range(.) ))) %>% pivot_longer(-ARM, names_to = c("var", "label"), names_sep = "_", values_to = "value") %>% pivot_wider(names_from = ARM, values_from = "value") demo_sex <- data_demo %>% add_count(ARM, SEX, name = "n_SEX") %>% select(ARM, SEX, n_SEX) %>% distinct() %>% pivot_longer(cols = c(SEX), names_to = "var", values_to = "label") %>% pivot_wider(names_from = ARM, values_from = n_SEX, values_fill = 0) %>% mutate(label = factor(label, levels = names(sex_decode), labels = sex_decode), `ARM A` = fmt_cnt_pct(`ARM A`, arm_pop["ARM A"]), `ARM B` = fmt_cnt_pct(`ARM B`, arm_pop["ARM B"]), `ARM C` = fmt_cnt_pct(`ARM C`, arm_pop["ARM C"]), `ARM D` = fmt_cnt_pct(`ARM D`, arm_pop["ARM D"])) demo_race <- data_demo %>% add_count(ARM, RACE, name = "n_RACE") %>% select(ARM, RACE, n_RACE) %>% distinct() %>% pivot_longer(cols = RACE, names_to = "var", values_to = "label") %>% pivot_wider(names_from = ARM, values_from = n_RACE, values_fill = 0) %>% mutate(label = factor(label, levels = names(race_decode), labels = race_decode), `ARM A` = fmt_cnt_pct(`ARM A`, arm_pop["ARM A"]), `ARM B` = fmt_cnt_pct(`ARM B`, arm_pop["ARM B"]), `ARM C` = fmt_cnt_pct(`ARM C`, arm_pop["ARM C"]), `ARM D` = fmt_cnt_pct(`ARM D`, arm_pop["ARM D"])) %>% arrange(var, label) demo <- bind_rows(demo_age, demo_sex, demo_race) #View(demo) # Stub decode block_fmt <- c(AGE = "Age", SEX = "Sex", RACE2 = "Race") # Define table tbl <- create_table(demo, first_row_blank = TRUE, borders = "all") %>% stub(c("var", "label"), width = 1.5) %>% column_defaults(width = 1) %>% spanning_header(`ARM B`, `ARM D`, "Treatments", n = 10) %>% define(var, blank_after = TRUE, format = block_fmt, label = "", label_row = TRUE) %>% define(label, label = "", indent = .25) %>% define(`ARM A`, align = "left", label = "Placebo", n = 36) %>% define(`ARM B`, align = "center", label = "Drug 10mg", n = 38) %>% define(`ARM C`, align = "right", label = "Drug 20mg", n = 38) %>% define(`ARM D`, align = "center", label = "Competitor", n = 38) %>% titles("Table 14.1/4", "Demographics and Baseline Characteristics", "Specify Population", borders = c("all"), blank_row = "both", align = "center", font_size = 14, bold = TRUE) %>% footnotes("Here is a footnote", "Here is another footnote", borders = "outside", blank_row = "both", align = "right") # Define Report rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 10) %>% add_content(tbl, align = "right") %>% page_header("Sponsor", "Drug") %>% page_footer(left = "Time", right = "Page [pg] of [tpg]") #%>% #page_by(var = "var", label = "Variable: ") # Write out report res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-user3: listings works.", { if (dev == TRUE) { # Data Filepath dir_data <- file.path(data_dir, "data") fp <- file.path(base_path, "pdf2/user3.pdf") # Removing to make last page exactly equal to available rows on page. # In this case, any added blank rows should be skipped. fil <- c("ABC-14-124", "ABC-15-153", "ABC-15-154", "ABC-15-155", "ABC-15-156", "ABC-16-045", "ABC-16-046", "ABC-16-047", "ABC-16-157", "ABC-16-158", "ABC-16-159", "ABC-16-160") # Load Data data_demo <- file.path(dir_data, "dm.csv") %>% read.csv() data_demo <- data_demo[!data_demo$USUBJID %in% fil, ] # Test that any assigned formats are applied attr(data_demo$SUBJID, "width") <- 1 attr(data_demo$SUBJID, "justify") <- "left" attr(data_demo$SUBJID, "format") <- "S:%s" #print(widths(data_demo)) names(data_demo) # Define table tbl <- create_table(data_demo) %>% define(USUBJID, id_var = TRUE) # Define Report rpt <- create_report(fp, font = "Arial", font_size = 12, orientation = "portrait") %>% titles("Listing 1.0", "Demographics Dataset") %>% add_content(tbl, align = "left") %>% page_header("Sponsor", "Drug") %>% page_footer(left = "Time", right = "Page [pg] of [tpg]") %>% footnotes("My footnotes") stm <- Sys.time() #Write out report res <- write_report(rpt, output_type = "PDF") etm <- Sys.time() etm - stm expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-user4: listing in cm and times works.", { if (dev == TRUE) { # Data Filepath dir_data <- file.path(data_dir, "data") fp <- file.path(base_path, "pdf2/user4.pdf") # Removing to make last page exactly equal to available rows on page. # In this case, any added blank rows should be skipped. fil <- c("ABC-14-124", "ABC-15-153", "ABC-15-154", "ABC-15-155", "ABC-15-156", "ABC-16-045", "ABC-16-046", "ABC-16-047", "ABC-16-157", "ABC-16-158", "ABC-16-159", "ABC-16-160") # Load Data data_demo <- file.path(dir_data, "dm.csv") %>% read.csv() data_demo <- data_demo[!data_demo$USUBJID %in% fil, ] # Test that any assigned formats are applied attr(data_demo$SUBJID, "width") <- 2.54 attr(data_demo$SUBJID, "justify") <- "left" attr(data_demo$SUBJID, "format") <- "S:%s" #print(widths(data_demo)) # Define table tbl <- create_table(data_demo) %>% define(USUBJID, id_var = TRUE) # Define Report rpt <- create_report(fp, font = "Times", font_size = 10, units = "cm") %>% titles("Listing 1.0", "Demographics Dataset") %>% add_content(tbl, align = "left") %>% page_header("Sponsor", "Drug") %>% page_footer(left = "Time", right = "Page [pg] of [tpg]") %>% footnotes("My footnote") #Write out report res <- write_report(rpt, output_type = "PDF") print(res$column_widths) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-user5: Portrait in 12pt Arial works as expected.", { if (dev == TRUE) { dir_data <- file.path(data_dir, "data") fp <- file.path(base_path, "pdf2/user5.pdf") # Read in prepared data df <- read.table(header = TRUE, text = ' var label A B "ampg" "N" "19" "13" "ampg" "Mean" "18.8 (6.5)" "22.0 (4.9)" "ampg" "Median" "16.4" "21.4" "ampg" "Q1 - Q3" "15.1 - 21.2" "19.2 - 22.8" "ampg" "Range" "10.4 - 33.9" "14.7 - 32.4" "cyl" "8 Cylinder" "10 ( 52.6%)" "4 ( 30.8%)" "cyl" "6 Cylinder" "4 ( 21.1%)" "3 ( 23.1%)" "cyl" "4 Cylinder" "5 ( 26.3%)" "6 ( 46.2%)"') # Create table tbl <- create_table(df, first_row_blank = TRUE) %>% define(var, label = "Variable", blank_after = TRUE, dedupe = TRUE, format = c(ampg = "Miles Per Gallon", cyl = "Cylinders")) %>% define(label, label = "") %>% define(A, label = "Group A", align = "center", n = 19) %>% define(B, label = "Group B", align = "center", n = 13) # Create report and add content rpt <- create_report(fp, orientation = "portrait", output_type = "PDF", font = "Arial", font_size = 12) %>% page_header(left = "Client: Motor Trend", right = "Study: Cars") %>% titles("Table 1.0", "MTCARS Summary Table") %>% add_content(tbl) %>% footnotes("* Motor Trend, 1974") %>% page_footer(left = Sys.time(), center = "Confidential", right = "Page [pg] of [tpg]") # Write out report res <- write_report(rpt) expect_equal(file.exists(fp), TRUE) } else expect_equal(TRUE, TRUE) }) test_that("pdf2-user6: User program works as expected for PDF.", { if (dev == TRUE) { fp <- file.path(base_path, "pdf2/user6.pdf") dir_data <- file.path(data_dir, "data/S") dat <- readRDS(file.path(dir_data, "for_david_to_debug.RDS")) tbl <- create_table(dat, borders = "outside", first_row_blank = TRUE) |> titles("Table 14-2.2.1.2. Baseline Demographics", "(Safety Analysis Set)", bold = TRUE, font_size = 11) |> stub(c("row_label1", "row_label2"), width = 3.4) |> define(row_label1, label_row = TRUE, blank_after = TRUE) |> define(row_label2, indent = .25) |> define(var1_1, label = "Cohort 1\n0.001 mg\nQW\n(N=11)\nn(%)") |> define(var1_2, label = "Cohort 2\n0.003 mg\nQW\n(N=11)\nn(%)") |> define(var1_3, label = "Cohort 3\n0.001 mg\nQW\n(N=11)\nn(%)") |> define(var1_4, label = "Cohort 4\n0.003 mg\nQW\n(N=11)\nn(%)") |> define(var1_5, label = "Cohort 5\n0.1 mg\nQW\n(N=11)\nn(%)") |> define(var1_6, label = "Cohort 6\n0.3 mg\nQW\n(N=11)\nn(%)") |> define(var1_Total, label = "Part 1\nNo Step\nDosing\nTotal\n(N=46)\nn(%)") |> define(ord_layer_index, visible = FALSE) |> define(paging_column, page_break = TRUE, visible = FALSE) |> column_defaults(width = .825, align = "center") |> footnotes("Page [pg] of [tpg]", align = "right", blank_row = "none") |> footnotes("Data cutoff date: 07DEC2022. N = Number of subjects in the analysis set. n = Number of subjects with observed data. SD = Standard Deviation, Q1 = First Quartile, Q3 = Third Quartile. S = Step Dosing.", "Safety analysis set includes all subjects that are enrolled and receive at least 1 dose of AMG 509.", paste("Cohort 7a = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 0.3 mg, C1D22: 0.3 mg; Cohort 7b = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 1 mg, C1D22: 1 mg; Cohort 7c =", "C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 1 mg; Cohort 8 = C1D1: 0.3 mg, C1D8: 1 mg, C1D15: 1 mg, C1D22: 1 mg; Cohort 9 = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15:", "0.75 mg, C1D22: 0.75 mg; Cohort 10 = C1D1: 0.1 mg, C1D8: 1 mg, C1D15: 1 mg, C1D22: 1 mg; Cohort 11 = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 1 mg,", "C1D22:1.5 mg; Cohort 12 = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 0.75 mg, C1D22: 1.5 mg; Cohort 13 = C1D1: 0.1 mg, C1D8: 0.3 mg, C1D15: 1 mg, C1D22: 2 mg."), "Two subjects received reduced dose on C1D8 in Cohort 10.", blank_row = "none") |> footnotes("Program: /userdata/stat/amg509/onc/20180146/analysis/mantl_pilot/tables/sme_table_project/t-dm-base-demo-saf-sd.sas", "Output: t14-02-002-001-002-dm-base-demo-saf-sd.rtf (Date Generated:31MAR23:13:37:59) Source: adam.adsl", blank_row = "above") rpt <- create_report(fp, output_type = "PDF", font = "Arial", font_size = 9) |> add_content(tbl, align = "left") |> set_margins(top = 1.5, bottom = 1, left = .7, right = 1) res <- write_report(rpt) # file.show(res$modified_path) #res$column_widths expect_equal(file.exists(res$modified_path), TRUE) } else { expect_equal(TRUE, TRUE) } })