* using log directory ‘/srv/hornik/tmp/CRAN_pretest/repmis.Rcheck’
* using R Under development (unstable) (2025-07-01 r88373)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux 13 (trixie)
* using session charset: UTF-8
* checking for file ‘repmis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘repmis’ version ‘0.5.1’
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Christopher Gandrud <christopher.gandrud@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http://CRAN.R-project.org/package=knitr
    From: man/LoadandCite.Rd
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: http://cran.r-project.org/package=repmis
    From: DESCRIPTION
          README.md
    CRAN URL not in canonical form
  URL: http://cran.r-project.org/web/packages/repmis/
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: http://cran.r-project.org/web/packages/xlsx/index.html
    From: README.md
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: http://en.wikipedia.org/wiki/BibTeX (moved to https://en.wikipedia.org/wiki/BibTeX)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: http://en.wikipedia.org/wiki/SHA-1 (moved to https://en.wikipedia.org/wiki/SHA-1)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: http://www.jstatsoft.org/style (moved to https://www.jstatsoft.org/style)
    From: man/LoadandCite.Rd
    Status: 301
    Message: Moved Permanently
  URL: https://github.com/hadley/devtools (moved to https://github.com/r-lib/devtools)
    From: README.md
    Status: 301
    Message: Moved Permanently
The canonical URL of the CRAN page for a package is 
  https://CRAN.R-project.org/package=pkgname
Canonical CRAN.R-project.org URLs use https.
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘repmis’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
  Cannot process chunk/lines:
    Karthik Ram.
    ## Version 0.2
    - Add tools to install old R package versions both in a stand alone function
    (`InstallOldPackages`) and as part of `LoadandCite`.
    - the `package` argument for `LoadandCite` is deprecated. Use `pkgs` instead.
  Cannot process chunk/lines:
    This is so the syntax matches `install.packages syntax better.
    ## Version 0.1.1
  Cannot process chunk/lines:
    Documentation and external package load fixes.
    ## Version 0.1
  Cannot process chunk/lines:
    Includes the functions `LoadandCite` for loading and citing R packages as well
  Cannot process chunk/lines:
    as `source_GitHubData` for downloading plain-text data from GitHub.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] NOTE
Found if() conditions comparing class() to string:
File ‘repmis/R/source_XlsxData.R’: if (class(sheet) == "character") ...
File ‘repmis/R/source_XlsxData.R’: if (class(sheet) != "character") ...
File ‘repmis/R/source_XlsxData.R’: if (class(sheet) == "character") ...
File ‘repmis/R/source_XlsxData.R’: if (class(sheet) != "character") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  source_data.Rd: fread
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘PackageCites.bib’
* checking for detritus in the temp directory ... OK
* DONE
Status: 5 NOTEs