* using log directory ‘/srv/hornik/tmp/CRAN/repeated.Rcheck’
* using R Under development (unstable) (2024-06-12 r86726)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.5 (2)
    Debian flang-new version 18.1.5 (2)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘repeated/DESCRIPTION’ ... OK
* this is package ‘repeated’ version ‘1.1.8’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Bruce Swihart <bruce.swihart@gmail.com>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  JK (29:5, 29:48)
  Kalman (27:66)
  isbn (29:24, 29:67)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-06-13 as issues were not corrected
    in time.

  Use of deleted Fortran features.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘repeated’ can be installed ... [20s/18s] OK
* used C compiler: ‘Debian clang version 18.1.6 (1)’
* used Fortran compiler: ‘Debian flang-new version 18.1.6 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘Lindsey_kalcount_paper.pdf’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [20s/20s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking examples ... [2s/2s] ERROR
Running examples in ‘repeated-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: logitord
> ### Title: Ordinal Random Effects Models with Dropouts
> ### Aliases: logitord logitord.print
> ### Keywords: models
> 
> ### ** Examples
> 
> 
> y <- trunc(runif(20,max=4))
> id <- gl(4,5)
> age <- rpois(20,20)
> times <- rep(1:5,4)
> logitord(y, id=id, out.ccov=~age, drop.ccov=age, pout=c(1,0,0),
+ 	pdrop=c(1,0))
Error: segfault from C stack overflow
Execution halted
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs