* using log directory ‘/srv/hornik/tmp/CRAN_pretest/relMix.Rcheck’
* using R Under development (unstable) (2025-01-06 r87534)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1)
    Debian flang-new version 19.1.6 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘relMix/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘relMix’ version ‘1.4.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/5s] NOTE
Maintainer: ‘Guro Dorum <guro.dorum@gmail.com>’

Found the following (possibly) invalid DOIs:
  DOI: doi.org/10.1007/s00414-015-1276-1
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1007/s00414-016-1526-x
    From: DESCRIPTION
    Status: 404
    Message: Not Found
  DOI: doi.org/10.1016/j.fsigss.2019.09.085
    From: DESCRIPTION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘relMix’ can be installed ... [7s/7s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/11s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] ERROR
Running examples in ‘relMix-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: relMix
> ### Title: Relationship inference based on mixtures
> ### Aliases: relMix
> 
> ### ** Examples
> 
> #Example 1: paternity trio with mixture of mother and child
> #Define alleles and frequencies
> alleles <- 1:2
> afreq <- c(0.4,0.6)
> #Define pedigrees
> persons <- c("CH","MO","AF")
> ped1 <- Familias::FamiliasPedigree(id=persons, dadid=c("AF",NA, NA), momid=c("MO", NA,NA),
+                         sex=c("male", "female", "male"))
> ped2 <- Familias::FamiliasPedigree(id=c(persons, "TF"), dadid=c("TF", NA, NA,NA),
+                         momid=c("MO", NA, NA,NA), sex=c("male", "female", "male", "male"))
> pedigrees <- list(isFather = ped1, unrelated=ped2)
> #Create locus object
> locus <- Familias::FamiliasLocus(frequencies=afreq,name="M1",
+                       allelenames= alleles)
> #Known genotypes of alleged father and mother
> gAF <- c(1,1)
> gMO <- c(1,1)
> #Mixture alleles
> R <- c(1,2)
> datamatrix <- createDatamatrix(locus,knownGenos=list(AF=gAF,MO=gMO),idsU=c("CH"))
> #Define dropout and drop-in values
> d <- 0.1
> di <- 0.05
> res <- relMix(pedigrees, locus, R, datamatrix, ids=c("MO","CH"),
+              D=list(c(0,0),c(d,d^2)),di=di, kinship=0)
*** buffer overflow detected ***: terminated
Aborted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [2s/2s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE