### Mediator model Call: glm(formula = bili_bin ~ trt + age + male + stage, family = binomial(link = "logit"), data = data) Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.53024 0.85116 -1.798 0.07220 . trt -0.17117 0.25982 -0.659 0.51003 age -0.01386 0.01299 -1.067 0.28610 male 1.33046 0.43911 3.030 0.00245 ** stage 0.74640 0.16356 4.563 5.03e-06 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 382.49 on 275 degrees of freedom Residual deviance: 349.60 on 271 degrees of freedom AIC: 359.6 Number of Fisher Scoring iterations: 4 ### Outcome model Call: survival::coxph(formula = Surv(time, status) ~ trt + bili_bin + age + male + stage, data = data, ties = "efron") n= 276, number of events= 129 coef exp(coef) se(coef) z Pr(>|z|) trt -0.190824 0.826278 0.183608 -1.039 0.2987 bili_bin 1.563912 4.777473 0.211434 7.397 1.40e-13 *** age 0.017857 1.018018 0.009109 1.960 0.0499 * male -0.014087 0.986012 0.241194 -0.058 0.9534 stage 0.585521 1.795926 0.130490 4.487 7.22e-06 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 exp(coef) exp(-coef) lower .95 upper .95 trt 0.8263 1.2102 0.5766 1.184 bili_bin 4.7775 0.2093 3.1566 7.231 age 1.0180 0.9823 1.0000 1.036 male 0.9860 1.0142 0.6146 1.582 stage 1.7959 0.5568 1.3906 2.319 Concordance= 0.795 (se = 0.019 ) Likelihood ratio test= 116.7 on 5 df, p=<2e-16 Wald test = 99.1 on 5 df, p=<2e-16 Score (logrank) test = 117.6 on 5 df, p=<2e-16 ### Mediation analysis est se Z p lower upper exp(est) cde -0.22898871 0.22032974 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 pnde -0.22898871 0.22032974 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 tnie -0.05958184 0.09322543 -0.6391158 0.5227476 -0.2423003 0.1231367 0.9421584 tnde -0.22898871 0.22032974 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 pnie -0.05958184 0.09322543 -0.6391158 0.5227476 -0.2423003 0.1231367 0.9421584 te -0.28857056 0.23923583 -1.2062180 0.2277335 -0.7574642 0.1803231 0.7493339 pm 0.18352535 0.27892819 0.6579663 0.5105598 -0.3631639 0.7302146 NA exp(lower) exp(upper) cde 0.5164240 1.224888 pnde 0.5164240 1.224888 tnie 0.7848204 1.131039 tnde 0.5164240 1.224888 pnie 0.7848204 1.131039 te 0.4688539 1.197604 pm NA NA Evaluated at: avar: trt a1 (intervened value of avar) = 2.3 a0 (reference value of avar) = 1.1 mvar: bili_bin m_cde (intervend value of mvar for cde) = 1.4 cvar: age male stage c_cond (covariate vector value) = 50 1 2 Note that effect estimates do not vary over m_cde and c_cond values when interaction = FALSE. ### Re-evaluation at c_cond = cmean est se Z p lower upper exp(est) cde -0.22898871 0.2203297 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 pnde -0.22898871 0.2203297 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 tnie -0.06877586 0.1055175 -0.6517959 0.5145329 -0.2755863 0.1380346 0.9335359 tnde -0.22898871 0.2203297 -1.0393001 0.2986652 -0.6608271 0.2028496 0.7953375 pnie -0.06877586 0.1055175 -0.6517959 0.5145329 -0.2755863 0.1380346 0.9335359 te -0.29776457 0.2442867 -1.2189142 0.2228768 -0.7765578 0.1810286 0.7424761 pm 0.20526792 0.2988365 0.6868903 0.4921519 -0.3804409 0.7909767 NA exp(lower) exp(upper) cde 0.5164240 1.224888 pnde 0.5164240 1.224888 tnie 0.7591269 1.148015 tnde 0.5164240 1.224888 pnie 0.7591269 1.148015 te 0.4599867 1.198450 pm NA NA