### Mediator model Call: glm(formula = bili_bin ~ trt + age + male + stage, family = binomial(link = "logit"), data = data) Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.53024 0.85116 -1.798 0.07220 . trt -0.17117 0.25982 -0.659 0.51003 age -0.01386 0.01299 -1.067 0.28610 male 1.33046 0.43911 3.030 0.00245 ** stage 0.74640 0.16356 4.563 5.03e-06 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 382.49 on 275 degrees of freedom Residual deviance: 349.60 on 271 degrees of freedom AIC: 359.6 Number of Fisher Scoring iterations: 4 ### Outcome model Call: MASS::glm.nb(formula = platelet ~ trt + bili_bin + age + male + stage, data = data, init.theta = 8.132711228, link = log) Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) 5.971661 0.140575 42.480 <2e-16 *** trt 0.026199 0.043550 0.602 0.5475 bili_bin -0.089038 0.045520 -1.956 0.0505 . age -0.003495 0.002159 -1.618 0.1056 male -0.042146 0.068578 -0.615 0.5388 stage -0.074391 0.026797 -2.776 0.0055 ** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Dispersion parameter for Negative Binomial(8.1327) family taken to be 1) Null deviance: 305.07 on 275 degrees of freedom Residual deviance: 282.21 on 270 degrees of freedom AIC: 3274.8 Number of Fisher Scoring iterations: 1 Theta: 8.133 Std. Err.: 0.703 2 x log-likelihood: -3260.806 ### Mediation analysis est se Z p lower upper cde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 pnde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 tnie 0.004488714 0.007229627 0.6208777 0.5346801 -0.009681094 0.01865852 tnde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 pnie 0.004488714 0.007229627 0.6208777 0.5346801 -0.009681094 0.01865852 te 0.035927117 0.052663602 0.6822001 0.4951124 -0.067291646 0.13914588 pm 0.126912192 0.256351942 0.4950701 0.6205506 -0.375528382 0.62935277 exp(est) exp(lower) exp(upper) cde 1.031938 0.9314723 1.143239 pnde 1.031938 0.9314723 1.143239 tnie 1.004499 0.9903656 1.018834 tnde 1.031938 0.9314723 1.143239 pnie 1.004499 0.9903656 1.018834 te 1.036580 0.9349225 1.149292 pm NA NA NA Evaluated at: avar: trt a1 (intervened value of avar) = 2.3 a0 (reference value of avar) = 1.1 mvar: bili_bin m_cde (intervend value of mvar for cde) = 1.4 cvar: age male stage c_cond (covariate vector value) = 50 1 2 Note that effect estimates do not vary over m_cde and c_cond values when interaction = FALSE. ### Re-evaluation at c_cond = cmean est se Z p lower upper cde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 pnde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 tnie 0.004550181 0.007261454 0.6266212 0.5309075 -0.009682007 0.01878237 tnde 0.031438403 0.052259767 0.6015795 0.5474541 -0.070988858 0.13386566 pnie 0.004550181 0.007261454 0.6266212 0.5309075 -0.009682007 0.01878237 te 0.035988584 0.052667506 0.6833166 0.4944068 -0.067237832 0.13921500 pm 0.128430337 0.257804051 0.4981704 0.6183640 -0.376856318 0.63371699 exp(est) exp(lower) exp(upper) cde 1.031938 0.9314723 1.143239 pnde 1.031938 0.9314723 1.143239 tnie 1.004561 0.9903647 1.018960 tnde 1.031938 0.9314723 1.143239 pnie 1.004561 0.9903647 1.018960 te 1.036644 0.9349728 1.149371 pm NA NA NA