### Mediator model Call: glm(formula = bili_bin ~ trt + age + male + stage, family = binomial(link = "logit"), data = data) Coefficients: Estimate Std. Error z value Pr(>|z|) (Intercept) -1.53024 0.85116 -1.798 0.07220 . trt -0.17117 0.25982 -0.659 0.51003 age -0.01386 0.01299 -1.067 0.28610 male 1.33046 0.43911 3.030 0.00245 ** stage 0.74640 0.16356 4.563 5.03e-06 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 (Dispersion parameter for binomial family taken to be 1) Null deviance: 382.49 on 275 degrees of freedom Residual deviance: 349.60 on 271 degrees of freedom AIC: 359.6 Number of Fisher Scoring iterations: 4 ### Outcome model Call: lm(formula = alk_phos ~ trt + bili_bin + age + male + stage, data = data) Residuals: Min 1Q Median 3Q Max -2014.2 -1073.6 -602.5 45.7 12064.5 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) 2109.343 833.939 2.529 0.0120 * trt -32.202 258.287 -0.125 0.9009 bili_bin 628.986 269.943 2.330 0.0205 * age -4.426 12.806 -0.346 0.7299 male -16.795 406.278 -0.041 0.9671 stage -49.136 159.007 -0.309 0.7575 --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Residual standard error: 2112 on 270 degrees of freedom Multiple R-squared: 0.02131, Adjusted R-squared: 0.003184 F-statistic: 1.176 on 5 and 270 DF, p-value: 0.3214 ### Mediation analysis est se Z p lower upper cde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 pnde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 tnie -31.5143112 50.031282 -0.6298921 0.5287652 -129.573823 66.545200 tnde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 pnie -31.5143112 50.031282 -0.6298921 0.5287652 -129.573823 66.545200 te -70.1568260 313.409480 -0.2238504 0.8228737 -684.428119 544.114467 pm 0.4491981 2.027267 0.2215782 0.8246423 -3.524171 4.422568 Evaluated at: avar: trt a1 (intervened value of avar) = 2.3 a0 (reference value of avar) = 1.1 mvar: bili_bin m_cde (intervend value of mvar for cde) = 1.4 cvar: age male stage c_cond (covariate vector value) = 50 1 2 Note that effect estimates do not vary over m_cde and c_cond values when interaction = FALSE. ### Re-evaluation at c_cond = cmean est se Z p lower upper cde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 pnde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 tnie -32.2207221 50.683825 -0.6357200 0.5249589 -131.559193 67.117749 tnde -38.6425148 309.944741 -0.1246755 0.9007805 -646.123044 568.838014 pnie -32.2207221 50.683825 -0.6357200 0.5249589 -131.559193 67.117749 te -70.8632368 313.502035 -0.2260376 0.8211722 -685.315935 543.589461 pm 0.4546888 2.030895 0.2238860 0.8228460 -3.525791 4.435169