### Mediator model Call: lm(formula = bili ~ trt + age + male + stage, data = data) Residuals: Min 1Q Median 3Q Max -4.1854 -2.5979 -1.2638 0.5727 24.2813 Coefficients: Estimate Std. Error t value Pr(>|t|) (Intercept) -2.54577 1.76354 -1.444 0.150018 trt 0.60723 0.54646 1.111 0.267464 age 0.02419 0.02706 0.894 0.372025 male -0.61583 0.84467 -0.729 0.466584 stage 1.26164 0.32279 3.909 0.000117 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 Residual standard error: 4.472 on 271 degrees of freedom Multiple R-squared: 0.06893, Adjusted R-squared: 0.05518 F-statistic: 5.016 on 4 and 271 DF, p-value: 0.0006483 ### Outcome model Call: survival::coxph(formula = Surv(time, status) ~ trt + bili + age + male + stage, data = data, ties = "efron") n= 276, number of events= 129 coef exp(coef) se(coef) z Pr(>|z|) trt -0.192511 0.824885 0.180450 -1.067 0.2860 bili 0.140134 1.150428 0.014301 9.799 < 2e-16 *** age 0.007463 1.007491 0.009537 0.782 0.4339 male 0.504040 1.655395 0.240725 2.094 0.0363 * stage 0.674402 1.962859 0.126505 5.331 9.77e-08 *** --- Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1 exp(coef) exp(-coef) lower .95 upper .95 trt 0.8249 1.2123 0.5792 1.175 bili 1.1504 0.8692 1.1186 1.183 age 1.0075 0.9926 0.9888 1.027 male 1.6554 0.6041 1.0328 2.653 stage 1.9629 0.5095 1.5318 2.515 Concordance= 0.803 (se = 0.017 ) Likelihood ratio test= 117.9 on 5 df, p=<2e-16 Wald test = 137.4 on 5 df, p=<2e-16 Score (logrank) test = 185.8 on 5 df, p=<2e-16 ### Mediation analysis est se Z p lower upper exp(est) cde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 pnde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 tnie 0.1021117 0.09248155 1.1041309 0.2695364 -0.07914877 0.2833723 1.1075072 tnde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 pnie 0.1021117 0.09248155 1.1041309 0.2695364 -0.07914877 0.2833723 1.1075072 te -0.1289017 0.23464650 -0.5493442 0.5827693 -0.58880037 0.3309970 0.8790604 pm -0.7055718 1.69784813 -0.4155682 0.6777260 -4.03329294 2.6221494 NA exp(lower) exp(upper) cde 0.5192214 1.213366 pnde 0.5192214 1.213366 tnie 0.9239025 1.327599 tnde 0.5192214 1.213366 pnie 0.9239025 1.327599 te 0.5549927 1.392356 pm NA NA Evaluated at: avar: trt a1 (intervened value of avar) = 2.3 a0 (reference value of avar) = 1.1 mvar: bili m_cde (intervend value of mvar for cde) = 1.4 cvar: age male stage c_cond (covariate vector value) = 50 1 2 Note that effect estimates do not vary over m_cde and c_cond values when interaction = FALSE. ### Re-evaluation at c_cond = cmean est se Z p lower upper exp(est) cde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 pnde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 tnie 0.1021117 0.09248155 1.1041309 0.2695364 -0.07914877 0.2833723 1.1075072 tnde -0.2310134 0.21654043 -1.0668374 0.2860453 -0.65542488 0.1933980 0.7937288 pnie 0.1021117 0.09248155 1.1041309 0.2695364 -0.07914877 0.2833723 1.1075072 te -0.1289017 0.23464650 -0.5493442 0.5827693 -0.58880037 0.3309970 0.8790604 pm -0.7055718 1.69784813 -0.4155682 0.6777260 -4.03329294 2.6221494 NA exp(lower) exp(upper) cde 0.5192214 1.213366 pnde 0.5192214 1.213366 tnie 0.9239025 1.327599 tnde 0.5192214 1.213366 pnie 0.9239025 1.327599 te 0.5549927 1.392356 pm NA NA