1 The SAS System 23:48 Wednesday, April 1, 2020 NOTE: Copyright (c) 2016 by SAS Institute Inc., Cary, NC, USA. NOTE: SAS (r) Proprietary Software 9.4 (TS1M5) Licensed to BRIGHAM & WOMENS HSPTL-DIV OF PREVENTATIVE MED-T&R, Site 70122551. NOTE: This session is executing on the Linux 2.6.32-754.23.1.el6.x86_64 (LIN X64) platform. NOTE: Updated analytical products: SAS/STAT 14.3 SAS/ETS 14.3 SAS/OR 14.3 SAS/IML 14.3 SAS/QC 14.3 NOTE: Additional host information: Linux LIN X64 2.6.32-754.23.1.el6.x86_64 #1 SMP Tue Sep 17 09:46:55 EDT 2019 x86_64 Red Hat Enterprise Linux Server release 6.10 (Santiago) You are running SAS 9. Some SAS 8 files will be automatically converted by the V9 engine; others are incompatible. Please see http://support.sas.com/rnd/migration/planning/platform/64bit.html PROC MIGRATE will preserve current SAS file attributes and is recommended for converting all your SAS libraries from any SAS 8 release to SAS 9. For details and examples, please see http://support.sas.com/rnd/migration/index.html This message is contained in the SAS news file, and is presented upon initialization. Edit the file "news" in the "misc/base" directory to display site-specific news and information in the program log. The command line option "-nonews" will prevent this display. NOTE: SAS initialization used: real time 0.05 seconds cpu time 0.03 seconds 1 2 /** Set libname */ 3 libname w './'; NOTE: Libref W was successfully assigned as follows: Engine: V9 Physical Name: /inv/kyoshida/cantos_stats/regmedint/tests/reference_results 4 5 /* Load SAS macro */ 6 %include './mediation.sas'; 4345 4346 /* Load data */ 4347 proc import datafile = './data-pbc_cc.csv' 4348 out = pbc_cc 4349 dbms = csv 4350 replace; 4351 run; 2 The SAS System 23:48 Wednesday, April 1, 2020 4352 /********************************************************************** 4353 * PRODUCT: SAS 4354 * VERSION: 9.4 4355 * CREATOR: External File Interface 4356 * DATE: 01APR20 4357 * DESC: Generated SAS Datastep Code 4358 * TEMPLATE SOURCE: (None Specified.) 4359 ***********************************************************************/ 4360 data WORK.PBC_CC ; 4361 %let _EFIERR_ = 0; /* set the ERROR detection macro variable */ 4362 infile './data-pbc_cc.csv' delimiter = ',' MISSOVER DSD lrecl=32767 firstobs=2 ; 4363 informat trt best32. ; 4364 informat bili best32. ; 4365 informat bili_bin best32. ; 4366 informat alk_phos best32. ; 4367 informat spiders best32. ; 4368 informat platelet best32. ; 4369 informat time best32. ; 4370 informat status best32. ; 4371 informat cens best32. ; 4372 informat age best32. ; 4373 informat male best32. ; 4374 informat stage best32. ; 4375 format trt best12. ; 4376 format bili best12. ; 4377 format bili_bin best12. ; 4378 format alk_phos best12. ; 4379 format spiders best12. ; 4380 format platelet best12. ; 4381 format time best12. ; 4382 format status best12. ; 4383 format cens best12. ; 4384 format age best12. ; 4385 format male best12. ; 4386 format stage best12. ; 4387 input 4388 trt 4389 bili 4390 bili_bin 4391 alk_phos 4392 spiders 4393 platelet 4394 time 4395 status 4396 cens 4397 age 4398 male 4399 stage 4400 ; 4401 if _ERROR_ then call symputx('_EFIERR_',1); /* set ERROR detection macro variable */ 4402 run; NOTE: The infile './data-pbc_cc.csv' is: Filename=/inv/kyoshida/cantos_stats/regmedint/tests/reference_results/data-pbc_cc.csv, Owner Name=kyoshida,Group Name=analyst, Access Permission=-rw-rw-r--, Last Modified=01Apr2020:23:48:01, 3 The SAS System 23:48 Wednesday, April 1, 2020 File Size (bytes)=13771 NOTE: 276 records were read from the infile './data-pbc_cc.csv'. The minimum record length was 44. The maximum record length was 52. NOTE: The data set WORK.PBC_CC has 276 observations and 12 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds 276 rows created in WORK.PBC_CC from ./data-pbc_cc.csv. NOTE: WORK.PBC_CC data set was successfully created. NOTE: The data set WORK.PBC_CC has 276 observations and 12 variables. NOTE: PROCEDURE IMPORT used (Total process time): real time 0.09 seconds cpu time 0.08 seconds 4403 4404 %mediation( 4405 data = pbc_cc, 4406 yvar = time, 4407 avar = trt, 4408 mvar = bili, 4409 cvar = age male stage, 4410 a0 = 1.1, 4411 a1 = 2.3, 4412 m = 1.4, 4413 yreg = survAFT_exp, 4414 mreg = linear, 4415 interaction = false, 4416 casecontrol = false, 4417 output = full, 4418 c = 50 1 2, 4419 boot = , 4420 cens = cens); There are 3 confounders in the string "age male stage" NOTE: There were 276 observations read from the data set WORK.PBC_CC. NOTE: The data set WORK.DATA1 has 276 observations and 7 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: There were 276 observations read from the data set WORK.DATA1. NOTE: The data set WORK.DATA21 has 1 observations and 3 variables. NOTE: PROCEDURE MEANS used (Total process time): real time 0.01 seconds cpu time 0.02 seconds 4 The SAS System 23:48 Wednesday, April 1, 2020 NOTE: There were 1 observations read from the data set WORK.DATA21. NOTE: The data set WORK.DATA21 has 1 observations and 1 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.DATA2NEW1 has 1 observations and 1 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.02 seconds cpu time 0.02 seconds NOTE: Appending WORK.DATA2NEW1 to WORK.DATA3. NOTE: BASE data set does not exist. DATA file is being copied to BASE file. NOTE: There were 1 observations read from the data set WORK.DATA2NEW1. NOTE: The data set WORK.DATA3 has 1 observations and 1 variables. NOTE: PROCEDURE APPEND used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: PROCEDURE SQL used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: There were 276 observations read from the data set WORK.DATA1. NOTE: The data set WORK.DATA22 has 1 observations and 3 variables. NOTE: PROCEDURE MEANS used (Total process time): real time 0.01 seconds cpu time 0.02 seconds NOTE: There were 1 observations read from the data set WORK.DATA22. NOTE: The data set WORK.DATA22 has 1 observations and 1 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.DATA2NEW2 has 1 observations and 1 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Appending WORK.DATA2NEW2 to WORK.DATA3. NOTE: There were 1 observations read from the data set WORK.DATA2NEW2. NOTE: 1 observations added. 5 The SAS System 23:48 Wednesday, April 1, 2020 NOTE: The data set WORK.DATA3 has 2 observations and 1 variables. NOTE: PROCEDURE APPEND used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: PROCEDURE SQL used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: There were 276 observations read from the data set WORK.DATA1. NOTE: The data set WORK.DATA23 has 1 observations and 3 variables. NOTE: PROCEDURE MEANS used (Total process time): real time 0.01 seconds cpu time 0.02 seconds NOTE: There were 1 observations read from the data set WORK.DATA23. NOTE: The data set WORK.DATA23 has 1 observations and 1 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.DATA2NEW3 has 1 observations and 1 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.00 seconds cpu time 0.01 seconds NOTE: Appending WORK.DATA2NEW3 to WORK.DATA3. NOTE: There were 1 observations read from the data set WORK.DATA2NEW3. NOTE: 1 observations added. NOTE: The data set WORK.DATA3 has 3 observations and 1 variables. NOTE: PROCEDURE APPEND used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: PROCEDURE SQL used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.DATA2 has 1 observations and 3 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.00 seconds cpu time 0.00 seconds 6 The SAS System 23:48 Wednesday, April 1, 2020 NOTE: The query requires remerging summary statistics back with the original data. WARNING: This CREATE TABLE statement recursively references the target table. A consequence of this is a possible data integrity problem. NOTE: Table WORK.DATA2 created, with 1 rows and 4 columns. NOTE: PROCEDURE SQL used (Total process time): real time 0.01 seconds cpu time 0.00 seconds NOTE: The query requires remerging summary statistics back with the original data. WARNING: This CREATE TABLE statement recursively references the target table. A consequence of this is a possible data integrity problem. NOTE: Table WORK.DATA2 created, with 1 rows and 5 columns. NOTE: PROCEDURE SQL used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: The query requires remerging summary statistics back with the original data. WARNING: This CREATE TABLE statement recursively references the target table. A consequence of this is a possible data integrity problem. NOTE: Table WORK.DATA2 created, with 1 rows and 6 columns. NOTE: PROCEDURE SQL used (Total process time): real time 0.01 seconds cpu time 0.00 seconds NOTE: Algorithm converged. NOTE: The data set WORK.GMCOVB has 7 observations and 8 variables. NOTE: The data set WORK.GMPARMS has 8 observations and 8 variables. NOTE: The PROCEDURE LIFEREG printed pages 1-2. NOTE: PROCEDURE LIFEREG used (Total process time): real time 0.02 seconds cpu time 0.03 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.OUT1 has 7 observations and 6 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: The data set WORK.OUT2 has 6 observations and 6 variables. NOTE: The PROCEDURE REG printed page 3. NOTE: PROCEDURE REG used (Total process time): real time 0.03 seconds cpu time 0.01 seconds NOTE: There were 6 observations read from the data set WORK.OUT2. NOTE: The PROCEDURE PRINT printed page 4. NOTE: PROCEDURE PRINT used (Total process time): real time 0.00 seconds 7 The SAS System 23:48 Wednesday, April 1, 2020 cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: PROCEDURE IML used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.EFFECT has 1 observations and 3 variables. NOTE: The data set WORK.SE has 1 observations and 3 variables. NOTE: The data set WORK.CIL has 1 observations and 3 variables. NOTE: The data set WORK.CIU has 1 observations and 3 variables. NOTE: The data set WORK.PVALUE has 1 observations and 3 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.02 seconds cpu time 0.01 seconds NOTE: IML Ready NOTE: Exiting IML. NOTE: The data set WORK.X3 has 3 observations and 4 variables. NOTE: The data set WORK.X4 has 3 observations and 1 variables. NOTE: PROCEDURE IML used (Total process time): real time 0.01 seconds cpu time 0.01 seconds NOTE: There were 3 observations read from the data set WORK.X4. NOTE: There were 3 observations read from the data set WORK.X3. NOTE: The data set WORK.X5 has 3 observations and 5 variables. NOTE: DATA statement used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: There were 3 observations read from the data set WORK.X5. NOTE: The PROCEDURE PRINT printed page 5. NOTE: PROCEDURE PRINT used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.DATA1 (memtype=DATA). NOTE: Deleting WORK.DATA2 (memtype=DATA). NOTE: Deleting WORK.DATA3 (memtype=DATA). NOTE: Deleting WORK.OUT1 (memtype=DATA). NOTE: Deleting WORK.OUT2 (memtype=DATA). NOTE: Deleting WORK.X3 (memtype=DATA). NOTE: Deleting WORK.X4 (memtype=DATA). NOTE: Deleting WORK.X5 (memtype=DATA). 8 The SAS System 23:48 Wednesday, April 1, 2020 NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.CIL (memtype=DATA). NOTE: Deleting WORK.CIU (memtype=DATA). NOTE: Deleting WORK.EFFECT (memtype=DATA). NOTE: Deleting WORK.PVALUE (memtype=DATA). NOTE: Deleting WORK.SE (memtype=DATA). NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.DATA21 (memtype=DATA). NOTE: Deleting WORK.DATA2NEW1 (memtype=DATA). NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.DATA22 (memtype=DATA). NOTE: Deleting WORK.DATA2NEW2 (memtype=DATA). NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.DATA23 (memtype=DATA). NOTE: Deleting WORK.DATA2NEW3 (memtype=DATA). NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.00 seconds NOTE: Deleting WORK.GMCOVB (memtype=DATA). NOTE: Deleting WORK.GMPARMS (memtype=DATA). 4421 run; NOTE: PROCEDURE DATASETS used (Total process time): real time 0.00 seconds cpu time 0.01 seconds NOTE: SAS Institute Inc., SAS Campus Drive, Cary, NC USA 27513-2414 NOTE: The SAS System used: real time 0.52 seconds cpu time 0.33 seconds 9 The SAS System 23:48 Wednesday, April 1, 2020