## Tests for regmed context("Testing regmed") expect2 <- c("med.1", "med.2") expect5 <- c("med.1", "med.2", "med.74", "med.88", "med.99") load("regmedfits.RData") data(medsim) filter2 <- regmed.prefilter(x[,1], med, y[,1], k=2) filter5 <- regmed.prefilter(x[,1], med, y[,1], k=5) test_that("prefilter", { expect_equal(colnames(filter2$med), expected=expect2) expect_equal(colnames(filter5$med), expected=expect5) }) fit.grid5 <- regmed.grid(filter5$x, filter5$med, filter5$y, lambda.vec=seq(1, .1, by=-.1), frac.lasso=.8) test_that("regmed_grid", { expect_equal(fit.grid5$grid.data$df, grid5$grid.data$df) expect_equal(fit.grid5$grid.data$bic, expected=grid5$grid.data$bic, tol=1e-2) }) fit.lam4 <- regmed.fit(filter5$x, filter5$med, filter5$y, lambda=.4, frac.lasso=.8) edges4 <- regmed.edges(fit.lam4) edgescoeff <- c(0.3579, 0.08275, 0.5104) # edges4$edges$coeff #lam4 <- fit.lam4; grid5 <- fit.grid5 #save(lam4, grid5, file="regmedfits.RData") test_that("regmed_single", { expect_equal(fit.lam4$alpha[,1], lam4$alpha[,1], tol=1e-4) expect_equal(fit.lam4$beta[,1], lam4$beta[,1], tol=1e-4) expect_equal(edges4$edges$coef, expected=edgescoeff, tol=1e-3) })