downloading reverse dependencies ‘fastFMM’, ‘fgdiR’, ‘fmi’, ‘funmediation’, ‘longsurr’, ‘MECfda’, ‘MJMbamlss’, ‘mMARCH.AC’, ‘mxfda’, ‘postGGIR’, ‘refund.shiny’, ‘rmfanova’, ‘SCoRES’, ‘sparseFLMM’, ‘FDboost’, ‘fPASS’, ‘ghcm’, ‘gmfamm’, ‘HRW’, ‘mlr’, ‘runDRT’, ‘spfda’, ‘tf’ trying URL 'file:///data/Repositories/CRAN/src/contrib/fastFMM_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fgdiR_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fmi_0.1.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/funmediation_1.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/longsurr_1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MECfda_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MJMbamlss_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mMARCH.AC_3.3.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mxfda_0.2.2-1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/postGGIR_2.4.0.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/refund.shiny_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/rmfanova_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SCoRES_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/sparseFLMM_0.4.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FDboost_1.1-3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fPASS_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ghcm_3.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gmfamm_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/HRW_1.0-6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr_2.19.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/runDRT_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/spfda_0.9.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tf_0.4.0.tar.gz' installing dependencies ‘accelerometry’, ‘ActCR’, ‘ActFrag’, ‘ada’, ‘bamlss’, ‘brnn’, ‘bst’, ‘cAIC4’, ‘care’, ‘cmaes’, ‘cosinor’, ‘cosinor2’, ‘crs’, ‘deepnet’, ‘denseFLMM’, ‘evtree’, ‘face’, ‘fdasrvf’, ‘FDboost’, ‘frbs’, ‘FSelector’, ‘FSelectorRcpp’, ‘gamboostLSS’, ‘GGIR’, ‘glme’, ‘Hotelling’, ‘irace’, ‘JMbayes2’, ‘laGP’, ‘LiblineaR’, ‘lmeresampler’, ‘LowRankQP’, ‘lsei’, ‘Matrix’, ‘MFPCA’, ‘MJMbamlss’, ‘mldr’, ‘mRMRe’, ‘pamr’, ‘praznik’, ‘refund’, ‘refund.shiny’, ‘registr’, ‘rFerns’, ‘rotationForest’, ‘RRF’, ‘Rsurrogate’, ‘rucrdtw’, ‘sda’, ‘sparseFLMM’, ‘sparseLDA’, ‘SpatEntropy’, ‘spatialTIME’, ‘spatstat.geom’, ‘stepPlr’, ‘survAUC’, ‘tvem’, ‘XML’ also installing the dependencies ‘diagonals’, ‘tab’, ‘hexView’, ‘nlmeU’, ‘HLMdiag’, ‘distributions3’, ‘dvmisc’, ‘unisensR’, ‘GGIRread’, ‘read.gt3x’, ‘dixon’, ‘survC1’, ‘tolerance’ begin installing package ‘diagonals’ begin installing package ‘Matrix’ begin installing package ‘hexView’ begin installing package ‘nlmeU’ begin installing package ‘distributions3’ begin installing package ‘GGIRread’ begin installing package ‘read.gt3x’ begin installing package ‘tolerance’ begin installing package ‘lsei’ begin installing package ‘glme’ begin installing package ‘cosinor’ begin installing package ‘LowRankQP’ begin installing package ‘Hotelling’ begin installing package ‘ada’ begin installing package ‘brnn’ begin installing package ‘care’ begin installing package ‘cmaes’ begin installing package ‘deepnet’ begin installing package ‘frbs’ begin installing package ‘FSelector’ begin installing package ‘FSelectorRcpp’ begin installing package ‘irace’ begin installing package ‘laGP’ begin installing package ‘LiblineaR’ begin installing package ‘praznik’ begin installing package ‘rFerns’ begin installing package ‘rotationForest’ begin installing package ‘RRF’ * installing *source* package ‘rotationForest’ ... ** this is package ‘rotationForest’ version ‘0.1.3’ ** package ‘rotationForest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotationForest) begin installing package ‘rucrdtw’ * installing *source* package ‘diagonals’ ... ** this is package ‘diagonals’ version ‘6.4.0’ ** package ‘diagonals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diagonals) begin installing package ‘sda’ * installing *source* package ‘nlmeU’ ... ** this is package ‘nlmeU’ version ‘0.71.7’ ** package ‘nlmeU’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlmeU) begin installing package ‘sparseLDA’ * installing *source* package ‘care’ ... ** this is package ‘care’ version ‘1.1.11’ ** package ‘care’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (care) begin installing package ‘stepPlr’ * installing *source* package ‘cmaes’ ... ** this is package ‘cmaes’ version ‘1.0-12’ ** package ‘cmaes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmaes) begin installing package ‘XML’ * installing *source* package ‘Hotelling’ ... ** this is package ‘Hotelling’ version ‘1.0-8’ ** package ‘Hotelling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Hotelling) * installing *source* package ‘deepnet’ ... ** this is package ‘deepnet’ version ‘0.2.1’ ** package ‘deepnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deepnet) * installing *source* package ‘hexView’ ... ** this is package ‘hexView’ version ‘0.3-4’ ** package ‘hexView’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hexView) * installing *source* package ‘LowRankQP’ ... ** this is package ‘LowRankQP’ version ‘1.0.6’ ** package ‘LowRankQP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9NedoB/R.INSTALL3d6993137be3fc/LowRankQP/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP.c -o LowRankQP.o LowRankQP.c: In function ‘LowRankQP’: LowRankQP.c:835:9: warning: ‘dbeta’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:745:13: note: ‘dbeta’ was declared here 745 | double *dbeta; | ^~~~~ LowRankQP.c:835:9: warning: ‘r2’ may be used uninitialized [-Wmaybe-uninitialized] 835 | LRQPCalcStats( n, m, p, Q, c, A, b, u, alpha, beta, xi, zeta, dalpha, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 | dbeta, dxi, dzeta, UminusAlpha, XiOnUminusAlpha, ZetaOnAlpha, w, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 | r2, D, &prim, &dual, &comp, &gap, &term, &mult, &t ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:757:13: note: ‘r2’ was declared here 757 | double *r2; | ^~ LowRankQP.c:857:9: warning: ‘R’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:763:13: note: ‘R’ was declared here 763 | double *R; | ^ LowRankQP.c:857:9: warning: ‘buffMxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:766:13: note: ‘buffMxP’ was declared here 766 | double *buffMxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPxP’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:767:13: note: ‘buffPxP’ was declared here 767 | double *buffPxP; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffPx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:768:13: note: ‘buffPx1’ was declared here 768 | double *buffPx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘M’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:770:13: note: ‘M’ was declared here 770 | double *M; | ^ LowRankQP.c:857:9: warning: ‘pivN’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:771:13: note: ‘pivN’ was declared here 771 | int *pivN; | ^~~~ LowRankQP.c:846:9: warning: ‘buffNxM’ may be used uninitialized [-Wmaybe-uninitialized] 846 | LRQPFactorize( n, m, method, Q, D, M, pivN, buffNxM, P, Beta, Lambda, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 | LambdaTemp, T ); | ~~~~~~~~~~~~~~~ LowRankQP.c:773:13: note: ‘buffNxM’ was declared here 773 | double *buffNxM; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘buffMx1’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:774:13: note: ‘buffMx1’ was declared here 774 | double *buffMx1; | ^~~~~~~ LowRankQP.c:857:9: warning: ‘P’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:776:13: note: ‘P’ was declared here 776 | double *P; | ^ LowRankQP.c:857:9: warning: ‘Beta’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:777:13: note: ‘Beta’ was declared here 777 | double *Beta; | ^~~~ LowRankQP.c:857:9: warning: ‘Lambda’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:778:13: note: ‘Lambda’ was declared here 778 | double *Lambda; | ^~~~~~ LowRankQP.c:857:9: warning: ‘LambdaTemp’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:779:13: note: ‘LambdaTemp’ was declared here 779 | double *LambdaTemp; | ^~~~~~~~~~ LowRankQP.c:857:9: warning: ‘T’ may be used uninitialized [-Wmaybe-uninitialized] 857 | LRQPCalcDx( n, m, p, method, Q, c, A, b, u, alpha, beta, xi, zeta, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 858 | dalpha, dbeta, dxi, dzeta, UminusAlpha, ZetaOnAlpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 859 | XiOnUminusAlpha, buffMxP, buffMx1, buffPxP, buffPx1, pivN, R, r, r1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 | r2, r3, r4, r5, D, M, &t, P, Beta, Lambda, LambdaTemp, T, &corr); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LowRankQP.c:780:13: note: ‘T’ was declared here 780 | double *T; | ^ gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LowRankQP_init.c -o LowRankQP_init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o LowRankQP.so LowRankQP.o LowRankQP_init.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9NedoB/R.INSTALL3d6993137be3fc/LowRankQP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-LowRankQP/00new/LowRankQP/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LowRankQP) * installing *source* package ‘ada’ ... ** this is package ‘ada’ version ‘2.0-5.1’ ** package ‘ada’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ada) * installing *source* package ‘rFerns’ ... ** this is package ‘rFerns’ version ‘5.0.0’ ** package ‘rFerns’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJ6fGd0/R.INSTALL3d69bd66074c68/rFerns/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ferns.c -o ferns.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o rFerns.so ferns.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJ6fGd0/R.INSTALL3d69bd66074c68/rFerns/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rFerns/00new/rFerns/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rFerns) * installing *source* package ‘lsei’ ... ** this is package ‘lsei’ version ‘1.3-0’ ** package ‘lsei’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaKudfD/R.INSTALL3d696f3a389489/lsei/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c lsei.f -o lsei.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c pnnls.f -o pnnls.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o lsei.so init.o lsei.o pnnls.o utils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaKudfD/R.INSTALL3d696f3a389489/lsei/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lsei/00new/lsei/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lsei) * installing *source* package ‘sda’ ... ** this is package ‘sda’ version ‘1.3.9’ ** package ‘sda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sda) * installing *source* package ‘brnn’ ... ** this is package ‘brnn’ version ‘0.9.4’ ** package ‘brnn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTMEn6Z/R.INSTALL3d69a314230e32/brnn/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Lanczos.c -o Lanczos.o Lanczos.c: In function ‘extreme_eigenvalues’: Lanczos.c:191:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 191 | for (xx=0.0,zp=z,p0=zp+*n;zp= 0){// new tree with "treeNumber2" is accepted | ^~ container.cpp:1130:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1130 | if(accept1 == 0) | ^~ container.cpp:1132:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1132 | if( accept1 >= 0){// new tree with "treeNumber1" is accepted | ^~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c node.cpp -o node.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree.cpp -o tree.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c variable.cpp -o variable.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o evtree.so container.o node.o tree.o variable.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu5FflK/R.INSTALL3d81c651ecd678/evtree/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evtree/00new/evtree/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evtree) * installing *source* package ‘cAIC4’ ... ** this is package ‘cAIC4’ version ‘1.1’ ** package ‘cAIC4’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cAIC4) * installing *source* package ‘mRMRe’ ... ** this is package ‘mRMRe’ version ‘2.1.2.2’ ** package ‘mRMRe’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZCaDnP/R.INSTALL3d81d350c495dd/mRMRe/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Data.cpp -o Data.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o Filter.cpp: In member function ‘const void Filter::placeElements(unsigned int, unsigned int, unsigned int)’: Filter.cpp:198:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 198 | for (int j = 0; j < mFixedFeatureCount; ++j) | ~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Math.cpp -o Math.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matrix.cpp -o Matrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MutualInformationMatrix.cpp -o MutualInformationMatrix.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o exports.cpp: In function ‘SEXPREC* export_concordance_index(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:55:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 55 | for (unsigned int i = 0; i < INTEGER(sampleStratumCount)[0]; ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:80:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 80 | for (unsigned int i = 0; i < LENGTH(childrenCountPerLevel); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:92:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 92 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:105:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 105 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:153:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 153 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:159:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 159 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:168:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 168 | for (unsigned int j = 0; j < LENGTH(targetFeatureIndices); ++j) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o mRMRe.so Data.o Filter.o Math.o Matrix.o MutualInformationMatrix.o exports.o -fopenmp -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZCaDnP/R.INSTALL3d81d350c495dd/mRMRe/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mRMRe/00new/mRMRe/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mRMRe) * installing *source* package ‘tab’ ... ** this is package ‘tab’ version ‘5.1.1’ ** package ‘tab’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tab) begin installing package ‘dvmisc’ * installing *source* package ‘FDboost’ ... ** this is package ‘FDboost’ version ‘1.1-3’ ** package ‘FDboost’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FDboost) * installing *source* package ‘refund’ ... ** this is package ‘refund’ version ‘0.1-40’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (refund) begin installing package ‘sparseFLMM’ begin installing package ‘refund.shiny’ * installing *source* package ‘sparseFLMM’ ... ** this is package ‘sparseFLMM’ version ‘0.4.2’ ** package ‘sparseFLMM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseFLMM) * installing *source* package ‘registr’ ... ** this is package ‘registr’ version ‘2.2.1’ ** package ‘registr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpW3S791/R.INSTALL3d81f75d4ff0be/registr/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expectedScores.cpp -o expectedScores.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c expectedXi.cpp -o expectedXi.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -DARMA_USE_CURRENT -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c squareTheta.cpp -o squareTheta.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o registr.so RcppExports.o expectedScores.o expectedXi.o squareTheta.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpW3S791/R.INSTALL3d81f75d4ff0be/registr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-registr/00new/registr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (registr) * installing *source* package ‘refund.shiny’ ... ** this is package ‘refund.shiny’ version ‘1.1.1’ ** package ‘refund.shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (refund.shiny) * installing *source* package ‘spatstat.geom’ ... ** this is package ‘spatstat.geom’ version ‘3.7-2’ ** package ‘spatstat.geom’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpqMolRm/R.INSTALL3d81db78a1f2f7/spatstat.geom/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c areadiff.c -o areadiff.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c auctionbf.c -o auctionbf.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdrymask.c -o bdrymask.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c close3pair.c -o close3pair.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c closepair.c -o closepair.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connectgraph.c -o connectgraph.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connectpix.c -o connectpix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dinfty.c -o dinfty.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discarea.c -o discarea.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discs.c -o discs.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dist2dpath.c -o dist2dpath.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distan3.c -o distan3.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distances.c -o distances.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distmapbin.c -o distmapbin.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dwpure.c -o dwpure.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exactPdist.c -o exactPdist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exactdist.c -o exactdist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fardist.c -o fardist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hasclose.c -o hasclose.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c knndistance.c -o knndistance.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c knngrid.c -o knngrid.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c loccum.c -o loccum.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metricPdist.c -o metricPdist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c minnnd.c -o minnnd.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nearestpix.c -o nearestpix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nn3Ddist.c -o nn3Ddist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nnMDdist.c -o nnMDdist.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nndistance.c -o nndistance.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nngrid.c -o nngrid.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c periodic.c -o periodic.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poly2im.c -o poly2im.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quasirandom.c -o quasirandom.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c raster.c -o raster.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rasterfilter.c -o rasterfilter.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scan.c -o scan.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seg2pix.c -o seg2pix.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trigraf.c -o trigraf.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c uniquemap.c -o uniquemap.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c veegraf.c -o veegraf.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xyseg.c -o xyseg.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o spatstat.geom.so areadiff.o auctionbf.o bdrymask.o close3pair.o closepair.o connectgraph.o connectpix.o dinfty.o discarea.o discs.o dist2dpath.o distan3.o distances.o distmapbin.o dwpure.o exactPdist.o exactdist.o fardist.o hasclose.o init.o knndistance.o knngrid.o loccum.o metricPdist.o minnnd.o nearestpix.o nn3Ddist.o nnMDdist.o nndistance.o nngrid.o periodic.o poly2im.o quasirandom.o raster.o rasterfilter.o scan.o seg2pix.o trigraf.o uniquemap.o veegraf.o xyseg.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpqMolRm/R.INSTALL3d81db78a1f2f7/spatstat.geom/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spatstat.geom/00new/spatstat.geom/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.geom) begin installing package ‘dixon’ begin installing package ‘SpatEntropy’ * installing *source* package ‘dixon’ ... ** this is package ‘dixon’ version ‘0.0-10’ ** package ‘dixon’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQnVgE8/R.INSTALL3d8aae4a3906c5/dixon/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dixonloop.f -o dixonloop.o f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs] gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o dixon.so dixonloop.o init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQnVgE8/R.INSTALL3d8aae4a3906c5/dixon/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dixon/00new/dixon/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dixon) begin installing package ‘spatialTIME’ * installing *source* package ‘SpatEntropy’ ... ** this is package ‘SpatEntropy’ version ‘2.2-4’ ** package ‘SpatEntropy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpatEntropy) * installing *source* package ‘bamlss’ ... ** this is package ‘bamlss’ version ‘1.2-5’ ** package ‘bamlss’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpgi3iyJ/R.INSTALL3d81e83ccd194a/bamlss/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bamlss_functions.c -o bamlss_functions.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bamlss_init.c -o bamlss_init.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnchol.c -o mvnchol.o gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mvnmodchol.c -o mvnmodchol.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o bamlss.so bamlss_functions.o bamlss_init.o mvnchol.o mvnmodchol.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpgi3iyJ/R.INSTALL3d81e83ccd194a/bamlss/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bamlss/00new/bamlss/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bamlss) begin installing package ‘MJMbamlss’ * installing *source* package ‘HLMdiag’ ... ** this is package ‘HLMdiag’ version ‘0.5.1’ ** package ‘HLMdiag’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-14) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJEPpP5/R.INSTALL3d81e34ab65c6/HLMdiag/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HLMdiag_init.c -o HLMdiag_init.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c cooksd_obs.cpp -o cooksd_obs.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c cooksd_subset.cpp -o cooksd_subset.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c covratio.cpp -o covratio.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c covtrace.cpp -o covtrace.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c linear_algebra_fnc.cpp -o linear_algebra_fnc.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_64BIT_WORD=1 -fpic -g -O2 -Wall -pedantic -mtune=native -c mdffits_subset.cpp -o mdffits_subset.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o HLMdiag.so HLMdiag_init.o cooksd_obs.o cooksd_subset.o covratio.o covtrace.o linear_algebra_fnc.o mdffits_subset.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJEPpP5/R.INSTALL3d81e34ab65c6/HLMdiag/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-HLMdiag/00new/HLMdiag/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HLMdiag) begin installing package ‘lmeresampler’ * installing *source* package ‘spatialTIME’ ... ** this is package ‘spatialTIME’ version ‘1.3.4-5’ ** package ‘spatialTIME’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatialTIME) * installing *source* package ‘fdasrvf’ ... ** this is package ‘fdasrvf’ version ‘2.4.3’ ** package ‘fdasrvf’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-14) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpnkm2Az/R.INSTALL3d81f8202d84dc/fdasrvf/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperSRSF.cpp -o wrapperSRSF.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c wrapperQMAP.cpp -o wrapperQMAP.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bayesian.cpp -o bayesian.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pair_align_functions_expomap.cpp -o pair_align_functions_expomap.o pair_align_functions_expomap.cpp: In function ‘arma::vec calcY(double, arma::vec)’: pair_align_functions_expomap.cpp:9:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 9 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp:14:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 14 | for (unsigned int i = 0; i < len; i++) { | ~~^~~~~ pair_align_functions_expomap.cpp: In function ‘Rcpp::NumericVector cuL2norm2(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:34:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 34 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:41:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 41 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp:46:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 46 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ pair_align_functions_expomap.cpp: In function ‘double order_l2norm(arma::vec, arma::vec)’: pair_align_functions_expomap.cpp:70:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 70 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:77:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 77 | for (unsigned int i = 0; i < n; i++) { | ~~^~~ pair_align_functions_expomap.cpp:84:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 84 | for (unsigned int i = 0; i < (n - 1); i++) { | ~~^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/DP.cpp -o fdasrsf/DP.o fdasrsf/DP.cpp: In function ‘double CostFn2(const double*, const double*, int, int, int, int, int, int, double, int)’: fdasrsf/DP.cpp:228:44: warning: ‘tmp_pen’ may be used uninitialized [-Wmaybe-uninitialized] 228 | E += (tmp*tmp + lam*tmp_pen); | ~~~^~~~~~~~ fdasrsf/DP.cpp:194:73: note: ‘tmp_pen’ was declared here 194 | double m = (j-l)/(double)(i-k), sqrtm = sqrt(m), E = 0, y, tmp, tmp_pen, ip, fp, q1dotq2; | ^~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I. -Ifdaqmap/incl/ -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c fdasrsf/dp_grid.cpp -o fdasrsf/dp_grid.o fdasrsf/dp_grid.cpp: In function ‘double dp_costs(double*, double*, int, double*, double*, int, int, double*, int*, int, double*, int*, int, double*, int*, double, size_t, int (*)[2])’: fdasrsf/dp_grid.cpp:32:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for ( i=0; i