* using log directory 'd:/RCompile/CRANincoming/R-devel/refund.Rcheck'
* using R Under development (unstable) (2023-07-16 r84696 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'refund/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'refund' version '0.1-32'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... Note_to_CRAN_maintainers
Maintainer: 'Julia Wrobel <julia.wrobel@emory.edu>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'refund' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [46s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'pfr_plot.gam':
plot.random.effect
  Code: function(x, P = NULL, data = NULL, label = "", se1.mult = 1,
                 se2.mult = 2, partial.resids = FALSE, rug = TRUE, se =
                 TRUE, scale = -1, n = 100, n2 = 40, n3 = 3, theta =
                 30, phi = 30, jit = FALSE, xlab = NULL, ylab = NULL,
                 main = NULL, ylim = NULL, xlim = NULL, too.far = 0.1,
                 shade = FALSE, shade.col = "gray80", shift = 0, trans
                 = I, by.resids = FALSE, scheme = 0, ...)
  Docs: function(x, P = NULL, data = NULL, label = "", se1.mult = 1,
                 se2.mult = 2, partial.resids = FALSE, rug = TRUE, se =
                 TRUE, scale = -1, n = 100, n2 = 40, n3 = 3, pers =
                 FALSE, theta = 30, phi = 30, jit = FALSE, xlab = NULL,
                 ylab = NULL, main = NULL, ylim = NULL, xlim = NULL,
                 too.far = 0.1, shade = FALSE, shade.col = "gray80",
                 shift = 0, trans = I, by.resids = FALSE, scheme = 0,
                 ...)
  Argument names in docs not in code:
    pers
  Mismatches in argument names (first 3):
    Position: 14 Code: theta Docs: pers
    Position: 15 Code: phi Docs: theta
    Position: 16 Code: jit Docs: phi

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [16s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [71s] OK
  Running 'testthat.R' [71s]
* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... [20s] OK
* DONE
Status: 1 WARNING