* using log directory ‘/srv/hornik/tmp/CRAN_pretest/refundBayes.Rcheck’
* using R Under development (unstable) (2026-04-01 r89777)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.8 (3+b1)
    Debian flang version 21.1.8 (3+b1)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-04-02 21:54:06 UTC
* checking for file ‘refundBayes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘refundBayes’ version ‘0.5.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Ziren Jiang <jian0746@umn.edu>’

Days since last update: 0
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘refundBayes’ can be installed ... [15s/15s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/3s] OK
* checking whether the package can be unloaded cleanly ... [4s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/3s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/3s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/16s] OK
* checking Rd files ... [0s/0s] WARNING
checkRd: (7) sofr_bayes.Rd:62-104: Tag \donttest not recognized
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [3s/3s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘fcox_bayes_vignette.Rmd’ using rmarkdown
pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception


Error: processing vignette 'fcox_bayes_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘fcox_bayes_vignette.Rmd’

--- re-building ‘fosr_bayes_vignette.Rmd’ using rmarkdown
pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception


Error: processing vignette 'fosr_bayes_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘fosr_bayes_vignette.Rmd’

--- re-building ‘sofr_bayes_vignette.Rmd’ using rmarkdown
pandoc: /usr/share/javascript/mathjax/MathJax.js: withBinaryFile: does not exist (No such file or directory)
HasCallStack backtrace:
  collectBacktraces, called at libraries/ghc-internal/src/GHC/Internal/Exception.hs:169:13 in ghc-internal:GHC.Internal.Exception
  toExceptionWithBacktrace, called at libraries/ghc-internal/src/GHC/Internal/IO.hs:260:11 in ghc-internal:GHC.Internal.IO
  throwIO, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:315:19 in ghc-internal:GHC.Internal.IO.Exception
  ioException, called at libraries/ghc-internal/src/GHC/Internal/IO/Exception.hs:319:20 in ghc-internal:GHC.Internal.IO.Exception


Error: processing vignette 'sofr_bayes_vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 1
--- failed re-building ‘sofr_bayes_vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘fcox_bayes_vignette.Rmd’ ‘fosr_bayes_vignette.Rmd’
  ‘sofr_bayes_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 1 NOTE