* using log directory ‘/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck’ * using R Under development (unstable) (2024-10-04 r87208) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘redatam/DESCRIPTION’ ... OK * this is package ‘redatam’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Jaime Salvador ’ New submission Possibly misspelled words in DESCRIPTION: REDATAM (2:8, 12:40) The Title field starts with the package name. The Title field should be in title case. Current version is: ‘REDATAM interface for R’ In title case that is: ‘REDATAM Interface for R’ The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘redatam’ can be installed ... [10s/25s] OK * used C++ compiler: ‘Debian clang version 18.1.8 (11)’ * checking C++ specification ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... NOTE Non-standard file/directory found at top level: ‘test01.R’ * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Found the following non-empty subdirectories of ‘inst’ also used by R: inst/libs It is recommended not to interfere with package subdirectories used by R. * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] NOTE *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:36.488] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log It looks like this package (or a package it requires) has a startup message which cannot be suppressed: see ?packageStartupMessage. * checking use of S3 registration ... OK * checking dependencies in R code ... NOTE *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:37.477] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log * checking S3 generic/method consistency ... WARNING *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:37.609] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log See section ‘Generic functions and methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... WARNING *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:37.787] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log The argument of a replacement function which corresponds to the right hand side must be named ‘value’. * checking foreign function calls ... NOTE *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:37.888] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... [2s/2s] NOTE *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:39.470] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:38.429] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log Found the following assignments to the global environment: File ‘redatam/R/redatam-query.R’: assign(dsname, df, .GlobalEnv) assign(dsname, newDf, .GlobalEnv) assign(dsname, df, .GlobalEnv) assign(dsname, df, .GlobalEnv) File ‘redatam/R/redatam-run.R’: assign(dsname, df, .GlobalEnv) assign(dsname, newDf, .GlobalEnv) assign(dsname, df, .GlobalEnv) assign(dsname, df, .GlobalEnv) *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:39.690] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:40.524] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log Undocumented code objects: ‘red_query’ ‘red_run’ ‘redatam_close_dictionary’ ‘redatam_list_entities’ ‘redatam_list_variables’ ‘redatam_open_dictionary’ ‘redatam_save_dictionary’ ‘redengine_destroy’ ‘redengine_init’ ‘redengine_version’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... WARNING *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:40.644] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:40.780] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:40.889] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log * checking Rd \usage sections ... NOTE *****************/srv/hornik/tmp/CRAN_pretest/redatam.Rcheck/redatam/libs/ _____ ______ _____ _______ __ __ | __ \| ____| __ \ /\|__ __|/\ | \/ | | |__) | |__ | | | | / \ | | / \ | \ / | | _ /| __| | | | |/ /\ \ | | / /\ \ | |\/| | | | \ \| |____| |__| / ____ \| |/ ____ \| | | | |_| \_\______|_____/_/ \_\_/_/ \_\_| |_| RedEngine 1.0.0-RC2 - Linux, compiled by 'GNU C++ version 11.4.0' on 'Oct 6 2024' [2024-10-07 23:43:41.103] [info] Using log file: /tmp/RtmpMUpIcL/working_dir/redatam/redatam.log The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... WARNING File which contains non-portable pragma(s) ‘src/dylib.hpp’ File which contains pragma(s) suppressing diagnostics: ‘src/dylib.hpp’ * checking compilation flags used ... OK * checking compiled code ... NOTE File ‘redatam/libs/libredengine-1.0.0-rc2.so’: Found ‘stderr’, possibly from ‘stderr’ (C) Objects: ‘format.o’, ‘red_execute.o’ Found ‘stdout’, possibly from ‘stdout’ (C) Objects: ‘format.o’, ‘red_execute.o’, ‘red_initialize.o’ File ‘redatam/libs/redatam.so’: Found ‘stderr’, possibly from ‘stderr’ (C) Objects: ‘format.o’, ‘red_execute.o’ Found ‘stdout’, possibly from ‘stdout’ (C) Objects: ‘format.o’, ‘red_execute.o’, ‘red_initialize.o’ Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking examples ... [0s/0s] OK * checking PDF version of manual ... [3s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... NOTE Found the following files/directories: ‘redatam’ * DONE Status: 6 WARNINGs, 9 NOTEs