* using log directory ‘/srv/hornik/tmp/CRAN/reclin2.Rcheck’ * using R Under development (unstable) (2023-07-15 r84693) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 16.0.6 (3) GNU Fortran (Debian 12.3.0-4) 12.3.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘reclin2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘reclin2’ version ‘0.3.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] Note_to_CRAN_maintainers Maintainer: ‘Jan van der Laan ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘reclin2’ can be installed ... [10s/10s] OK * used C++ compiler: ‘Debian clang version 16.0.6 (3)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s/4s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [14s/4s] NOTE Examples with CPU time > 2.5 times elapsed time user system elapsed ratio select_threshold 3.700 0.122 0.455 8.400 select_n_to_m 4.228 0.180 0.623 7.075 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [7s/8s] OK Running ‘helpers.R’ [0s/0s] Running ‘test_cluster_pair.R’ [0s/1s] Running ‘test_cluster_pair_blocking.R’ [0s/1s] Running ‘test_cluster_pair_minsim.R’ [1s/1s] Running ‘test_compare_vars.R’ [0s/0s] Running ‘test_distribute_over_cluster.R’ [0s/0s] Running ‘test_greedy.R’ [0s/0s] Running ‘test_merge_pairs.R’ [0s/1s] Running ‘test_pair.R’ [0s/0s] Running ‘test_pair_blocking.R’ [0s/0s] Running ‘test_pair_minsim.R’ [0s/0s] Running ‘test_score_simple.R’ [0s/1s] Running ‘test_select_greedy.R’ [0s/0s] Running ‘test_select_preprocess.R’ [0s/0s] Running ‘test_select_unique.R’ [2s/1s] Running R code in ‘test_select_unique.R’ had CPU time 2.6 times elapsed time Running ‘test_set_seed.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking re-building of vignette outputs ... [21s/6s] OK Re-building vignettes had CPU time 3.3 times elapsed time * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 NOTE