library(testthat) library(recipes) train <- tibble::tibble( col1 = c("a", "b", "c"), col2 = c(NA, "d", "e"), col3 = c("k", NA, "g") ) test <- tibble::tibble( col1 = c(NA, NA, NA), col2 = c("t", "d", "e"), col3 = c("z", "f", NA) ) test_that("step_indicate_na populates binaries correctly", { rec1 <- recipe(train) %>% step_indicate_na(col1) %>% prep(train, verbose = FALSE, retain = TRUE) expect_identical( bake(rec1, train)$na_ind_col1, c(0L, 0L, 0L) ) expect_identical( bake(rec1, test)$na_ind_col1, c(1L, 1L, 1L) ) rec2 <- recipe(train) %>% step_indicate_na(col2, col3) %>% prep(train, verbose = FALSE, retain = TRUE) expect_equal(bake(rec2, train)$na_ind_col2, c(1, 0, 0)) expect_equal(bake(rec2, train)$na_ind_col3, c(0, 1, 0)) expect_equal(bake(rec2, test)$na_ind_col2, c(0, 0, 0)) expect_equal(bake(rec2, test)$na_ind_col3, c(0, 0, 1)) }) test_that("step_indicate_na on all columns", { baked <- recipe(Ozone ~ ., data = airquality) %>% step_indicate_na(everything()) %>% prep(airquality, verbose = FALSE, retain = TRUE) %>% bake(new_data = NULL) expect_named( baked, c( "Solar.R", "Wind", "Temp", "Month", "Day", "Ozone", "na_ind_Solar.R", "na_ind_Wind", "na_ind_Temp", "na_ind_Month", "na_ind_Day", "na_ind_Ozone" ) ) }) test_that("step_indicate_na on subset of columns", { baked <- recipe(Ozone ~ ., data = airquality) %>% step_indicate_na(Ozone, Solar.R) %>% prep(airquality, verbose = FALSE, retain = TRUE) %>% bake(new_data = NULL) expect_named( baked, c( "Solar.R", "Wind", "Temp", "Month", "Day", "Ozone", "na_ind_Ozone", "na_ind_Solar.R" ) ) baked2 <- recipe(Ozone ~ ., data = airquality) %>% step_indicate_na(Solar.R) %>% prep(airquality, verbose = FALSE, retain = TRUE) %>% bake(new_data = NULL) expect_named( baked2, c( "Solar.R", "Wind", "Temp", "Month", "Day", "Ozone", "na_ind_Solar.R" ) ) }) test_that("check_name() is used", { dat <- dplyr::as_tibble(mtcars) dat$na_ind_mpg <- dat$mpg rec <- recipe(~ ., data = dat) %>% step_indicate_na(mpg) expect_snapshot( error = TRUE, prep(rec, training = dat) ) }) # Infrastructure --------------------------------------------------------------- test_that("bake method errors when needed non-standard role columns are missing", { rec1 <- recipe(train) %>% step_indicate_na(col1) %>% update_role(col1, new_role = "potato") %>% update_role_requirements(role = "potato", bake = FALSE)%>% prep(train, verbose = FALSE, retain = TRUE) expect_error(bake(rec1, new_data = test[, 2:3]), class = "new_data_missing_column") }) test_that("empty printing", { rec <- recipe(mpg ~ ., mtcars) rec <- step_indicate_na(rec) expect_snapshot(rec) rec <- prep(rec, mtcars) expect_snapshot(rec) }) test_that("empty selection prep/bake is a no-op", { rec1 <- recipe(mpg ~ ., mtcars) rec2 <- step_indicate_na(rec1) rec1 <- prep(rec1, mtcars) rec2 <- prep(rec2, mtcars) baked1 <- bake(rec1, mtcars) baked2 <- bake(rec2, mtcars) expect_identical(baked1, baked2) }) test_that("empty selection tidy method works", { rec <- recipe(mpg ~ ., mtcars) rec <- step_indicate_na(rec) expect <- tibble(terms = character(), id = character()) expect_identical(tidy(rec, number = 1), expect) rec <- prep(rec, mtcars) expect_identical(tidy(rec, number = 1), expect) }) test_that("keep_original_cols works", { new_names <- c("na_ind_mpg") rec <- recipe(~ mpg, mtcars) %>% step_indicate_na(all_predictors(), keep_original_cols = FALSE) rec <- prep(rec) res <- bake(rec, new_data = NULL) expect_equal( colnames(res), new_names ) rec <- recipe(~ mpg, mtcars) %>% step_indicate_na(all_predictors(), keep_original_cols = TRUE) rec <- prep(rec) res <- bake(rec, new_data = NULL) expect_equal( colnames(res), c("mpg", new_names) ) }) test_that("keep_original_cols - can prep recipes with it missing", { rec <- recipe(~ mpg, mtcars) %>% step_indicate_na(all_predictors()) rec$steps[[1]]$keep_original_cols <- NULL expect_snapshot( rec <- prep(rec) ) expect_error( bake(rec, new_data = mtcars), NA ) }) test_that("printing", { rec <- recipe(Ozone ~ ., data = airquality) %>% step_indicate_na(all_predictors()) expect_snapshot(print(rec)) expect_snapshot(prep(rec)) })