library(testthat) library(recipes) skip_if_not_installed("modeldata") data(credit_data, package = "modeldata") set.seed(342) in_training <- sample(1:nrow(credit_data), 2000) credit_tr <- credit_data[in_training, ] credit_te <- credit_data[-in_training, ] test_that("simple median", { rec <- recipe(Price ~ ., data = credit_tr) impute_rec <- rec %>% step_impute_median(Age, Assets, Income, id = "") imputed <- prep(impute_rec, training = credit_tr, verbose = FALSE) te_imputed <- bake(imputed, new_data = credit_te) expect_equal(te_imputed$Age, credit_te$Age) assets_pred <- median(credit_tr$Assets, na.rm = TRUE) assets_pred <- recipes:::cast(assets_pred, credit_tr$Assets) expect_equal( te_imputed$Assets[is.na(credit_te$Assets)], rep(assets_pred, sum(is.na(credit_te$Assets))) ) inc_pred <- median(credit_tr$Income, na.rm = TRUE) inc_pred <- recipes:::cast(inc_pred, credit_tr$Assets) expect_equal( te_imputed$Income[is.na(credit_te$Income)], rep(inc_pred, sum(is.na(credit_te$Income))) ) medians <- vapply(credit_tr[, c("Age", "Assets", "Income")], median, double(1), na.rm = TRUE ) medians <- purrr::map2(medians, credit_tr[, c("Age", "Assets", "Income")], recipes:::cast) medians <- unlist(medians) imp_tibble_un <- tibble( terms = c("Age", "Assets", "Income"), value = rep(NA_real_, 3), id = "" ) imp_tibble_tr <- tibble( terms = c("Age", "Assets", "Income"), value = as.integer(unlist(medians)), id = "" ) expect_equal(as.data.frame(tidy(impute_rec, 1)), as.data.frame(imp_tibble_un)) expect_equal(as.data.frame(tidy(imputed, 1)), as.data.frame(imp_tibble_tr)) }) test_that("non-numeric", { rec <- recipe(Price ~ ., data = credit_tr) impute_rec <- rec %>% step_impute_median(Assets, Job) expect_snapshot(error = TRUE, prep(impute_rec, training = credit_tr, verbose = FALSE) ) }) test_that("all NA values", { rec <- recipe(Price ~ ., data = credit_tr) impute_rec <- rec %>% step_impute_median(Age, Assets) imputed <- prep(impute_rec, training = credit_tr, verbose = FALSE) imputed_te <- bake(imputed, new_data = credit_te %>% mutate(Age = NA)) expect_equal(unique(imputed_te$Age), imputed$steps[[1]]$medians$Age) }) test_that("Deprecation warning", { expect_snapshot(error = TRUE, recipe(~ ., data = mtcars) %>% step_medianimpute() ) }) test_that("case weights", { credit_tr_cw <- credit_tr %>% mutate(Amount = frequency_weights(Amount)) impute_rec <- recipe(Price ~ ., data = credit_tr_cw) %>% step_impute_median(Age, Assets, Income, id = "") %>% prep() ref_medians <- credit_tr_cw %>% select(Age, Assets, Income) %>% medians(credit_tr_cw$Amount) expect_equal( impute_rec$steps[[1]]$medians, as.list(ref_medians) ) expect_snapshot(impute_rec) # ---------------------------------------------------------------------------- credit_tr_cw <- credit_tr %>% mutate(Amount = importance_weights(Amount)) impute_rec <- recipe(Price ~ ., data = credit_tr_cw) %>% step_impute_median(Age, Assets, Income, id = "") %>% prep() ref_medians <- credit_tr_cw %>% select(Age, Assets, Income) %>% medians(wts = NULL) expect_equal( impute_rec$steps[[1]]$medians, as.list(ref_medians) ) expect_snapshot(impute_rec) }) # Infrastructure --------------------------------------------------------------- test_that("bake method errors when needed non-standard role columns are missing", { rec <- recipe(Price ~ ., data = credit_tr) impute_rec <- rec %>% step_impute_median(Age) %>% update_role(Age, new_role = "potato") %>% update_role_requirements(role = "potato", bake = FALSE) imputed <- prep(impute_rec, training = credit_tr, verbose = FALSE) expect_error(bake(imputed, new_data = credit_te[, c(-5)]), class = "new_data_missing_column") }) test_that("empty printing", { rec <- recipe(mpg ~ ., mtcars) rec <- step_impute_median(rec) expect_snapshot(rec) rec <- prep(rec, mtcars) expect_snapshot(rec) }) test_that("empty selection prep/bake is a no-op", { rec1 <- recipe(mpg ~ ., mtcars) rec2 <- step_impute_median(rec1) rec1 <- prep(rec1, mtcars) rec2 <- prep(rec2, mtcars) baked1 <- bake(rec1, mtcars) baked2 <- bake(rec2, mtcars) expect_identical(baked1, baked2) }) test_that("empty selection tidy method works", { rec <- recipe(mpg ~ ., mtcars) rec <- step_impute_median(rec) expect <- tibble(terms = character(), value = double(), id = character()) expect_identical(tidy(rec, number = 1), expect) rec <- prep(rec, mtcars) expect_identical(tidy(rec, number = 1), expect) }) test_that("printing", { rec <- recipe(Price ~ ., data = credit_tr) %>% step_impute_median(Age, Assets, Income) expect_snapshot(print(rec)) expect_snapshot(prep(rec)) })