library(testthat) test_that('correct means', { exp_means <- colMeans(mtcars) calc_means <- averages(mtcars) expect_equal(exp_means, calc_means) exp_means <- cov.wt(mtcars, frac_wts)$center calc_means <- averages(mtcars, frac_wts) expect_equal(exp_means, calc_means) exp_means <- cov.wt(mtcars, freq_wts)$center calc_means <- averages(mtcars, freq_wts) expect_equal(exp_means, calc_means) # Missing case weight exp_means <- cov.wt(mtcars[-1,], freq_wts[-1])$center calc_means <- averages(mtcars, miss_wts) expect_equal(exp_means, calc_means) # Missing data in x exp_means <- cov.wt(mtcars, freq_wts)$center exp_means[2] <- weighted.mean(mtcar_mis[[2]], freq_wts, na.rm = TRUE) exp_means[3] <- weighted.mean(mtcar_mis[[3]], freq_wts, na.rm = TRUE) calc_means <- averages(mtcar_mis, freq_wts) expect_equal(exp_means, calc_means) }) test_that('correct medians', { exp_medians <- apply(mtcars, 2, median) calc_medians <- medians(mtcars) expect_equal(exp_medians, calc_medians) exp_medians <- map_dbl(mtcars, weighted_median_impl, wts = frac_wts) calc_medians <- medians(mtcars, frac_wts) expect_equal(exp_medians, calc_medians) exp_medians <- map_dbl(mtcars, weighted_median_impl, wts = freq_wts) calc_medians <- medians(mtcars, freq_wts) expect_equal(exp_medians, calc_medians) # Missing case weight exp_medians <- map_dbl(mtcars[-1, ], weighted_median_impl, wts = freq_wts[-1]) calc_medians <- medians(mtcars, miss_wts) expect_equal(exp_medians, calc_medians) # Missing data in x exp_medians <- map_dbl(mtcars, weighted_median_impl, wts = freq_wts) exp_medians[2] <- weighted_median_impl(mtcar_mis[[2]][-1], freq_wts[-1]) exp_medians[3] <- weighted_median_impl(mtcar_mis[[3]][-2], freq_wts[-2]) calc_medians <- medians(mtcar_mis, freq_wts) expect_equal(exp_medians, calc_medians) }) test_that('correct variances', { exp_vars <- diag(var(mtcars)) calc_vars <- variances(mtcars) expect_equal(exp_vars, calc_vars) exp_vars <- diag(cov.wt(mtcars, frac_wts)$cov) calc_vars <- variances(mtcars, frac_wts) expect_equal(exp_vars, calc_vars) exp_vars <- diag(cov.wt(mtcars, freq_wts)$cov) calc_vars <- variances(mtcars, freq_wts) expect_equal(exp_vars, calc_vars) # Missing case weight exp_vars <- diag(cov.wt(mtcars[-1,], freq_wts[-1])$cov) calc_vars <- variances(mtcars, miss_wts) expect_equal(exp_vars, calc_vars) # Missing data in x exp_vars <- diag(cov.wt(mtcars, freq_wts)$cov) exp_vars[2] <- diag(cov.wt(mtcar_mis[-1,2,drop = FALSE], freq_wts[-1])$cov) exp_vars[3] <- diag(cov.wt(mtcar_mis[-2,3,drop = FALSE], freq_wts[-2])$cov) calc_vars <- variances(mtcar_mis, freq_wts) expect_equal(exp_vars, calc_vars) # Missing data in x with na_rm = FALSE exp_vars <- diag(cov.wt(mtcars, freq_wts)$cov) exp_vars[map_lgl(mtcar_mis, ~any(is.na(.x)))] <- NA calc_vars <- variances(mtcar_mis, freq_wts, na_rm = FALSE) expect_equal(exp_vars, calc_vars) }) test_that('correct covariances', { exp_cors <- cov(mtcars) calc_cors <- covariances(mtcars) expect_equal(exp_cors, calc_cors) exp_cors <- cov.wt(mtcars, frac_wts, cor = FALSE)$cov calc_cors <- covariances(mtcars, frac_wts) expect_equal(exp_cors, calc_cors) exp_cors <- cov.wt(mtcars, freq_wts, cor = FALSE)$cov calc_cors <- covariances(mtcars, freq_wts) expect_equal(exp_cors, calc_cors) # Missing case weight exp_cors <- cov.wt(mtcars[-1,], freq_wts[-1], cor = FALSE)$cov calc_cors <- covariances(mtcars, miss_wts) expect_equal(exp_cors, calc_cors) # Missing data in x exp_cors <- cov.wt(mtcars[-(1:2), 1:3], freq_wts[-(1:2)], cor = FALSE)$cov calc_cors <- covariances(mtcar_mis[, 1:3], freq_wts) expect_equal(exp_cors, calc_cors) }) test_that('correct correlations', { exp_cors <- cor(mtcars) calc_cors <- correlations(mtcars) expect_equal(exp_cors, calc_cors) exp_cors <- cov.wt(mtcars, frac_wts, cor = TRUE)$cor calc_cors <- correlations(mtcars, frac_wts) expect_equal(exp_cors, calc_cors) exp_cors <- cov.wt(mtcars, freq_wts, cor = TRUE)$cor calc_cors <- correlations(mtcars, freq_wts) expect_equal(exp_cors, calc_cors) # Missing case weight exp_cors <- cov.wt(mtcars[-1,], freq_wts[-1], cor = TRUE)$cor calc_cors <- correlations(mtcars, miss_wts) expect_equal(exp_cors, calc_cors) # Missing data in x exp_cors <- cov.wt(mtcars[-(1:2), 1:3], freq_wts[-(1:2)], cor = TRUE)$cor calc_cors <- correlations(mtcar_mis[, 1:3], freq_wts) expect_equal(exp_cors, calc_cors) }) test_that("is_unsupervised_weights works", { expect_true(is_unsupervised_weights(frequency_weights(5))) expect_false(is_unsupervised_weights(importance_weights(5))) expect_snapshot(error = TRUE, is_unsupervised_weights(3)) }) test_that("are_weights_used works", { expect_null(are_weights_used(NULL)) expect_true(are_weights_used(frequency_weights(1))) expect_true(are_weights_used(importance_weights(1))) expect_null(are_weights_used(NULL, unsupervised = TRUE)) expect_false(are_weights_used(importance_weights(1), unsupervised = TRUE)) expect_true(are_weights_used(frequency_weights(1), unsupervised = TRUE)) })