library(testthat) library(recipes) skip_if_not_installed("modeldata") data("Sacramento", package = "modeldata") sacr <- Sacramento sacr$city <- as.character(sacr$city) sacr$zip <- as.character(sacr$zip) set.seed(1) sacr$city[sample(1:nrow(sacr), 20)] <- NA_character_ sacr_missing <- sacr sacr$city[is.na(sacr$city)] <- "missing" sacr <- sacr[complete.cases(sacr), -3] sacr_fac <- sacr sacr_fac$city <- factor(sacr_fac$city) sacr_fac$zip <- factor(sacr_fac$zip) test_that("dummy variables with factor inputs", { rec <- recipe(sqft ~ zip + city, data = sacr_fac) dummy <- rec %>% step_dummy(city, zip, id = "") dummy_trained <- prep(dummy, training = sacr_fac, verbose = FALSE, strings_as_factors = FALSE) dummy_pred <- bake(dummy_trained, new_data = sacr_fac, all_predictors()) expect_false(any(colnames(dummy_pred) == "city")) expect_false(any(colnames(dummy_pred) == "zip")) dummy_pred <- dummy_pred[, order(colnames(dummy_pred))] dummy_pred <- as.data.frame(dummy_pred) rownames(dummy_pred) <- NULL exp_res <- model.matrix(sqft ~ zip + city, data = sacr_fac)[, -1] exp_res <- exp_res[, colnames(exp_res) != "sqft"] colnames(exp_res) <- gsub("^zip", "zip_", colnames(exp_res)) colnames(exp_res) <- gsub("^city", "city_", colnames(exp_res)) colnames(exp_res) <- make.names(colnames(exp_res)) exp_res <- exp_res[, order(colnames(exp_res))] exp_res <- as.data.frame(exp_res) rownames(exp_res) <- NULL expect_equal(dummy_pred, exp_res, ignore_attr = TRUE) dum_tibble <- tibble(terms = c("city", "zip"), columns = rep(rlang::na_chr, 2), id = "") dum_tibble_prepped_1 <- tibble( terms = "city", columns = attributes(dummy_trained$steps[[1]]$levels$city)$values, id = "" ) %>% slice(-1) dum_tibble_prepped_2 <- tibble( terms = "zip", columns = attributes(dummy_trained$steps[[1]]$levels$zip)$values, id = "" ) %>% slice(-1) expect_equal(tidy(dummy, 1), dum_tibble) expect_equal( tidy(dummy_trained, 1), bind_rows(dum_tibble_prepped_1, dum_tibble_prepped_2) ) }) test_that("dummy variables errors with character inputs", { rec <- recipe(sqft ~ zip + city, data = sacr) dummy <- rec %>% step_dummy(city, zip) expect_snapshot( error = TRUE, prep(dummy, training = sacr, verbose = FALSE, strings_as_factors = FALSE) ) }) test_that("check_type() is used", { expect_snapshot( error = TRUE, recipe(sqft ~ zip + price + city, data = sacr) %>% step_dummy(city, zip, price) %>% prep() ) }) test_that("create double dummy variables", { rec <- recipe(sqft ~ zip + city, data = sacr_fac) dummy <- rec %>% step_dummy(city, zip, id = "") dummy_trained <- prep(dummy, training = sacr_fac, verbose = FALSE, strings_as_factors = FALSE) dummy_pred <- bake(dummy_trained, new_data = sacr_fac, all_predictors()) expect_true(all(vapply(dummy_pred, is.double, logical(1)))) }) test_that("create all dummy variables", { rec <- recipe(sqft ~ zip + city + price, data = sacr_fac) dummy <- rec %>% step_dummy(city, zip, one_hot = TRUE, id = "") dummy_trained <- prep(dummy, training = sacr_fac, verbose = FALSE, strings_as_factors = FALSE) dummy_pred <- bake(dummy_trained, new_data = sacr_fac, all_predictors()) dummy_pred <- dummy_pred[, order(colnames(dummy_pred))] dummy_pred <- as.data.frame(dummy_pred) rownames(dummy_pred) <- NULL exp_res <- NULL for (pred in c("city", "price", "zip")) { tmp <- model.matrix(as.formula(paste("~", pred, "+ 0")), data = sacr_fac) colnames(tmp) <- gsub(paste0("^", pred), paste0(pred, "_"), colnames(tmp)) exp_res <- bind_cols(exp_res, as_tibble(tmp)) } colnames(exp_res) <- make.names(colnames(exp_res)) exp_res <- as.data.frame(exp_res) rownames(exp_res) <- NULL # TODO: need some help with this one # expect_equal(dummy_pred, exp_res, ignore_attr = TRUE) dum_tibble <- tibble(terms = c("city", "zip"), columns = rep(rlang::na_chr, 2), id = "") dum_tibble_prepped_1 <- tibble( terms = "city", columns = attributes(dummy_trained$steps[[1]]$levels$city)$values, id = "" ) dum_tibble_prepped_2 <- tibble( terms = "zip", columns = attributes(dummy_trained$steps[[1]]$levels$zip)$values, id = "" ) expect_equal( tidy(dummy_trained, 1), bind_rows(dum_tibble_prepped_1, dum_tibble_prepped_2) ) }) test_that("tests for issue #91", { rec <- recipe(~city, data = sacr) factors <- rec %>% step_dummy(city) factors <- prep(factors, training = sacr) factors_data_1 <- bake(factors, new_data = sacr) # Remove one category in city factors_data_2 <- bake(factors, new_data = sacr %>% filter(city != "SACRAMENTO")) expect_equal(names(factors_data_1), names(factors_data_2)) # now with ordered factor sacr$ordered_city <- as.ordered(sacr$city) rec <- recipe(~ordered_city, data = sacr) orderedfac <- rec %>% step_dummy(ordered_city) orderedfac <- prep(orderedfac, training = sacr) ordered_data_1 <- bake(orderedfac, new_data = sacr) # Remove one category in city ordered_data_2 <- bake(orderedfac, new_data = sacr %>% filter(city != "SACRAMENTO")) expect_equal(names(ordered_data_1), names(ordered_data_2)) }) test_that("tests for NA values in factor", { rec <- recipe(~city, data = sacr_missing) factors <- rec %>% step_dummy(city) expect_snapshot( factors <- prep(factors, training = sacr_missing) ) factors_data_0 <- bake(factors, new_data = NULL) expect_snapshot( factors_data_1 <- bake(factors, new_data = sacr_missing) ) expect_true( all(complete.cases(factors_data_0) == complete.cases(sacr_missing[, "city"])) ) expect_true( all(complete.cases(factors_data_1) == complete.cases(sacr_missing[, "city"])) ) }) test_that("tests for NA values in ordered factor", { sacr_ordered <- sacr_missing sacr_ordered$city <- as.ordered(sacr_ordered$city) rec <- recipe(~city, data = sacr_ordered) factors <- rec %>% step_dummy(city) expect_snapshot( factors <- prep(factors, training = sacr_ordered) ) factors_data_0 <- bake(factors, new_data = NULL) expect_snapshot( factors_data_1 <- bake(factors, new_data = sacr_ordered) ) expect_true( all(complete.cases(factors_data_0) == complete.cases(sacr_ordered[, "city"])) ) expect_true( all(complete.cases(factors_data_1) == complete.cases(sacr_ordered[, "city"])) ) }) test_that("new levels", { df <- data.frame( y = c(1, 0, 1, 1, 0, 0, 0, 1, 1, 1, 0, 0, 1, 0, 1, 0, 0, 0, 1, 0), x1 = c( "A", "B", "B", "B", "B", "A", "A", "A", "B", "A", "A", "B", "A", "C", "C", "B", "A", "B", "C", "A" ), stringsAsFactors = FALSE ) training <- df[1:10, ] testing <- df[11:20, ] training$y <- as.factor(training$y) training$x1 <- as.factor(training$x1) testing$y <- as.factor(testing$y) testing$x1 <- as.factor(testing$x1) expect_snapshot( recipes:::warn_new_levels(testing$x1, levels(training$x1)) ) expect_silent( recipes:::warn_new_levels(training$x1, levels(training$x1)) ) rec <- recipe(y ~ x1, data = training) %>% step_dummy(x1) expect_silent( rec <- prep(rec, training = training) ) expect_snapshot( bake(rec, new_data = testing) ) }) test_that("tests for issue #301", { rec <- recipe(~Species, data = iris) dummies <- rec %>% step_dummy(Species) dummies <- prep(dummies, training = iris) expect_equal(NULL, attr(dummies$steps[[1]]$levels$Species, ".Environment")) saved_recipe <- tempfile() saveRDS(dummies, file = saved_recipe) read_recipe <- readRDS(file = saved_recipe) unlink(saved_recipe) expect_equal(bake(dummies, new_data = iris), bake(read_recipe, new_data = iris)) saved_dummies <- dummies saved_recipe <- tempfile() save(saved_dummies, file = saved_recipe) rm(saved_dummies) load(file = saved_recipe) unlink(saved_recipe) expect_equal(bake(dummies, new_data = iris), bake(saved_dummies, new_data = iris)) }) test_that("works with non-standard column names", { df <- tibble(`with space` = factor(letters[1:3])) expect_equal( recipe(~., data = df) %>% step_dummy(all_predictors()) %>% prep() %>% bake(new_data = NULL) %>% colnames(), c("with space_b", "with space_c") ) expect_equal( recipe(~., data = df) %>% step_dummy(all_predictors(), one_hot = TRUE) %>% prep() %>% bake(new_data = NULL) %>% colnames(), c("with space_a", "with space_b", "with space_c") ) }) test_that("naming function", { expect_equal(dummy_names("x", letters[1:3]), c("x_a", "x_b", "x_c")) expect_equal( dummy_names("x", letters[1:3], ordinal = TRUE), c("x_1", "x_2", "x_3") ) }) test_that("Deprecation warning", { expect_snapshot(error = TRUE, recipe(~ ., data = mtcars) %>% step_dummy(preserve = TRUE) ) }) test_that("no columns selected", { zdat <- tibble( y = c(1, 2, 3), x = c("a", "a", "a"), z = 3:1 ) rec <- recipe(y ~ ., data = zdat) %>% step_zv(all_predictors()) %>% step_dummy(all_nominal()) %>% prep(training = zdat) expect_null(rec$steps[[2]]$levels) expect_equal(names(bake(rec, zdat)), c("z", "y")) expect_snapshot(print(rec)) exp_tidy <- tibble(terms = character(), columns = character(), id = character()) expect_equal(exp_tidy, tidy(rec, number = 2)) }) test_that("check_name() is used", { dat <- iris dat$Species_versicolor <- dat$Species rec <- recipe(~., data = dat) %>% step_dummy(Species) expect_snapshot( error = TRUE, prep(rec, training = dat) ) }) # Infrastructure --------------------------------------------------------------- test_that("bake method errors when needed non-standard role columns are missing", { rec <- recipe(sqft ~ zip + city, data = sacr_fac) dummy <- rec %>% step_dummy(city, zip, id = "") %>% update_role(city, zip, new_role = "potato") %>% update_role_requirements(role = "potato", bake = FALSE) dummy_trained <- prep(dummy, training = sacr_fac, verbose = FALSE, strings_as_factors = FALSE) expect_error(bake(dummy_trained, new_data = sacr_fac[, 3:4], all_predictors()), class = "new_data_missing_column") }) test_that("empty printing", { rec <- recipe(mpg ~ ., mtcars) rec <- step_dummy(rec) expect_snapshot(rec) rec <- prep(rec, mtcars) expect_snapshot(rec) }) test_that("empty selection prep/bake is a no-op", { rec1 <- recipe(mpg ~ ., mtcars) rec2 <- step_dummy(rec1) rec1 <- prep(rec1, mtcars) rec2 <- prep(rec2, mtcars) baked1 <- bake(rec1, mtcars) baked2 <- bake(rec2, mtcars) expect_identical(baked1, baked2) }) test_that("empty selection tidy method works", { rec <- recipe(mpg ~ ., mtcars) rec <- step_dummy(rec) expect <- tibble(terms = character(), columns = character(), id = character()) expect_identical(tidy(rec, number = 1), expect) rec <- prep(rec, mtcars) expect_identical(tidy(rec, number = 1), expect) }) test_that("keep_original_cols works", { new_names <- c("Species_versicolor", "Species_virginica") rec <- recipe(~ Species, iris) %>% step_dummy(all_predictors(), keep_original_cols = FALSE) rec <- prep(rec) res <- bake(rec, new_data = NULL) expect_equal( colnames(res), new_names ) rec <- recipe(~ Species, iris) %>% step_dummy(all_predictors(), keep_original_cols = TRUE) rec <- prep(rec) res <- bake(rec, new_data = NULL) expect_equal( colnames(res), c("Species", new_names) ) }) test_that("keep_original_cols - can prep recipes with it missing", { rec <- recipe(~ Species, iris) %>% step_dummy(all_predictors()) rec$steps[[1]]$keep_original_cols <- NULL expect_snapshot( rec <- prep(rec) ) expect_error( bake(rec, new_data = iris), NA ) }) test_that("printing", { rec <- recipe(sqft ~ ., data = sacr_fac) %>% step_dummy(city, zip) expect_snapshot(print(rec)) expect_snapshot(prep(rec)) })