downloading reverse dependencies ... downloading LipidMS_3.0.5.tar.gz ... ok downloading MALDIquantForeign_0.14.1.tar.gz ... ok installing dependencies ‘CHNOSZ’, ‘MALDIquant’, ‘readBrukerFlexData’, ‘readMzXmlData’ begin installing package ‘readMzXmlData’ begin installing package ‘CHNOSZ’ begin installing package ‘MALDIquant’ begin installing package ‘readBrukerFlexData’ * installing *source* package ‘readBrukerFlexData’ ... ** this is package ‘readBrukerFlexData’ version ‘1.9.3’ ** package ‘readBrukerFlexData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readBrukerFlexData) * installing *source* package ‘readMzXmlData’ ... ** this is package ‘readMzXmlData’ version ‘2.8.4’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readMzXmlData) * installing *source* package ‘MALDIquant’ ... ** this is package ‘MALDIquant’ version ‘1.22.3’ ** package ‘MALDIquant’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFC8GYD/R.INSTALL3edf1366241f21/MALDIquant/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colMedians.c -o colMedians.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c localMaxima.c -o localMaxima.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lowerConvexHull.c -o lowerConvexHull.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c morphologicalFilters.c -o morphologicalFilters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c snip.c -o snip.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFC8GYD/R.INSTALL3edf1366241f21/MALDIquant/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MALDIquant/00new/MALDIquant/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MALDIquant) * installing *source* package ‘CHNOSZ’ ... ** this is package ‘CHNOSZ’ version ‘2.2.0’ ** package ‘CHNOSZ’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP3snBg/R.INSTALL3edf0e7c1e30fb/CHNOSZ/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c H2O92D.f -o H2O92D.o H2O92D.f:2839:37: 2839 | DOUBLE PRECISION FUNCTION power(base,exp) | ^ Warning: ‘__result_power’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2943:72: 2943 | END | ^ Warning: ‘__result_tdegus’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2920:38: 2920 | DOUBLE PRECISION FUNCTION TdegUS(it,t) | ^ note: ‘__result_tdegus’ was declared here H2O92D.f:2913:72: 2913 | END | ^ Warning: ‘__result_tdegk’ may be used uninitialized [-Wmaybe-uninitialized] H2O92D.f:2890:37: 2890 | DOUBLE PRECISION FUNCTION TdegK(it,t) | ^ note: ‘__result_tdegk’ was declared here gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count_letters.c -o count_letters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o CHNOSZ.so H2O92D.o count_letters.o init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP3snBg/R.INSTALL3edf0e7c1e30fb/CHNOSZ/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-CHNOSZ/00new/CHNOSZ/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CHNOSZ) checking readMzXmlData_2.8.4.tar.gz ... checking LipidMS_3.0.5.tar.gz ... checking MALDIquantForeign_0.14.1.tar.gz ... Depends: Package: readMzXmlData Depends: R (>= 4.2.0) Imports: base64enc, digest, XML Timings: user system elapsed readMzXmlData 21.034 3.266 25.103 Results: Check status summary: OK Source packages 1 Reverse depends 2 Check results summary: readMzXmlData ... OK rdepends_LipidMS ... OK rdepends_MALDIquantForeign ... OK Check results changes: Package: LipidMS Check: CRAN incoming feasibility Old result: NOTE